Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SNORA18.4-201ENST00000516440 124 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.680-201ENST00000516441 93 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 RNU7-53P-201ENST00000516705 60 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 MIR4661-201ENST00000582720 75 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 AC131055.1-201ENST00000584626 316 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 AL020996.3-201ENST00000606617 222 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.65-201ENST00000362846 100 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 SNORD113.3-201ENST00000364630 78 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 RNU6-1189P-201ENST00000383958 107 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 MIR570-201ENST00000384917 97 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 MIR7-2-201ENST00000384970 110 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.618-201ENST00000410949 107 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 RPS29P24-201ENST00000486345 171 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 UBL5P1-201ENST00000507979 193 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 RNU6-1270P-201ENST00000517128 108 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 RNU6-111P-201ENST00000517179 105 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 AC036111.3-201ENST00000526389 112 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 CYP3A137P-201ENST00000562436 69 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 MIR4698-201ENST00000577795 80 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 MIR8055-201ENST00000610739 97 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 AC108706.1-201ENST00000611053 297 ntBASIC0.89□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.23-201ENST00000362496 106 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.60-201ENST00000362831 98 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.168-201ENST00000363740 102 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.440-201ENST00000384120 114 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.477-201ENST00000384352 108 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.489-201ENST00000384410 101 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 RNU6-561P-201ENST00000516222 102 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 SNORD36C-201ENST00000516733 66 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 MIR5000-201ENST00000577717 103 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 AC009779.6-201ENST00000603972 165 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 Z97988.1-201ENST00000637697 135 ntBASIC0.88□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.75-201ENST00000362927 97 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.308-201ENST00000365043 101 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.571-201ENST00000384753 98 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 SNORD77.3-201ENST00000391113 65 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 AL035398.1-201ENST00000430869 322 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 RNU7-67P-201ENST00000459003 62 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 RNU6-998P-201ENST00000515894 101 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 RNA5SP436-201ENST00000516020 115 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 MIR4308-201ENST00000580634 81 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 MIR4264-201ENST00000583520 66 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 Z83818.1-201ENST00000603584 150 ntBASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.87□□□□□ -2.27
CCDC3Q9BQI4 RNU6-978P-201ENST00000364371 103 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 RNU6-275P-201ENST00000364910 107 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.401-201ENST00000383965 117 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 RNU6-342P-201ENST00000384521 104 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 POLR2J4-204ENST00000418424 324 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 AL121914.1-201ENST00000450188 156 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 U7.7-201ENST00000459276 60 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 SNORD124-201ENST00000459577 104 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 SNORD116-25-201ENST00000516517 92 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 MIR378D2-201ENST00000580636 98 ntBASIC0.86□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.200-201ENST00000364018 102 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 RNU1-36P-201ENST00000365130 165 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.330-201ENST00000365230 109 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 SNORA1-201ENST00000384107 130 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 RNU6-918P-201ENST00000391219 106 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 RNU6-493P-201ENST00000391321 108 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.797-201ENST00000515977 94 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 RNY3P16-201ENST00000516338 101 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 RNU6-1110P-201ENST00000516462 101 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 RNU6-958P-201ENST00000516995 106 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 MRPS18CP4-201ENST00000535821 231 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 MIR5197-201ENST00000583721 112 ntBASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
CCDC3Q9BQI4 RNU6-574P-201ENST00000384265 107 ntBASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 RNU4-70P-201ENST00000384579 139 ntBASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 snosnR66.1-201ENST00000391095 99 ntBASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 RNU7-80P-201ENST00000459562 61 ntBASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 RNA5SP255-201ENST00000516370 107 ntBASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 AP000753.3-201ENST00000604083 169 ntBASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 RNU2-4P-201ENST00000606190 192 ntBASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 AC141273.2-201ENST00000618989 130 ntBASIC0.84□□□□□ -2.27
CCDC3Q9BQI4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.28
CCDC3Q9BQI4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 MIR411-201ENST00000362239 96 ntBASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.83-201ENST00000363005 113 ntBASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 RNU6-654P-201ENST00000364373 107 ntBASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 RNU6-643P-201ENST00000384018 107 ntBASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 RNU6-913P-201ENST00000390913 95 ntBASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 PDCD5P2-201ENST00000507570 312 ntBASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 ACA64.5-201ENST00000516207 127 ntBASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 AC025627.3-201ENST00000582078 182 ntBASIC0.83□□□□□ -2.28
CCDC3Q9BQI4 SNORD114-26-201ENST00000363543 72 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 RNU6-312P-201ENST00000364629 107 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 RNU6-597P-201ENST00000365620 102 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.454-201ENST00000384224 113 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 RNU6-125P-201ENST00000384505 107 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 208 ms