Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU6-1014P-201ENST00000383940 103 ntBASIC-3.4□□□□□ -2.95
VPS13AQ96RL7 Y_RNA.409-201ENST00000383990 98 ntBASIC-3.4□□□□□ -2.95
VPS13AQ96RL7 MIR363-201ENST00000384840 75 ntBASIC-3.4□□□□□ -2.95
VPS13AQ96RL7 SCOCP1-201ENST00000554676 349 ntBASIC-3.4□□□□□ -2.95
VPS13AQ96RL7 RNU6-329P-201ENST00000459618 107 ntBASIC-3.4□□□□□ -2.95
VPS13AQ96RL7 AC091133.4-201ENST00000511142 308 ntBASIC-3.4□□□□□ -2.95
VPS13AQ96RL7 RNU6-762P-201ENST00000517107 102 ntBASIC-3.4□□□□□ -2.95
VPS13AQ96RL7 RNU6-1066P-201ENST00000363573 105 ntBASIC-3.41□□□□□ -2.95
VPS13AQ96RL7 RNU2-39P-201ENST00000410604 198 ntBASIC-3.41□□□□□ -2.95
VPS13AQ96RL7 AC012467.1-201ENST00000607740 256 ntBASIC-3.41□□□□□ -2.95
VPS13AQ96RL7 Y_RNA.9-201ENST00000362354 101 ntBASIC-3.41□□□□□ -2.96
VPS13AQ96RL7 SNORD113-3-201ENST00000364830 72 ntBASIC-3.41□□□□□ -2.96
VPS13AQ96RL7 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC-3.41□□□□□ -2.96
VPS13AQ96RL7 AC114878.1-201ENST00000441166 358 ntBASIC-3.41□□□□□ -2.96
VPS13AQ96RL7 UBE2D3P4-201ENST00000441973 436 ntBASIC-3.41□□□□□ -2.96
VPS13AQ96RL7 MIR3941-201ENST00000582572 103 ntBASIC-3.41□□□□□ -2.96
VPS13AQ96RL7 TCL6_2.1-201ENST00000615162 119 ntBASIC-3.41□□□□□ -2.96
VPS13AQ96RL7 MIR379-201ENST00000362218 67 ntBASIC-3.42□□□□□ -2.96
VPS13AQ96RL7 GPR143P-201ENST00000434155 205 ntBASIC-3.42□□□□□ -2.96
VPS13AQ96RL7 RNU6-1129P-201ENST00000515964 104 ntBASIC-3.42□□□□□ -2.96
VPS13AQ96RL7 U6.96-201ENST00000636425 70 ntBASIC-3.42□□□□□ -2.96
VPS13AQ96RL7 U3.4-201ENST00000363352 213 ntBASIC-3.42□□□□□ -2.96
VPS13AQ96RL7 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-3.42□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.239-201ENST00000364444 113 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 RNU6-737P-201ENST00000365370 107 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 MIR520D-201ENST00000385002 87 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.240-201ENST00000364469 95 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.515-201ENST00000384535 112 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 RNU6-550P-201ENST00000391057 101 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 MIR208B-201ENST00000401172 77 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.687-201ENST00000516558 91 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 AC073343.1-201ENST00000328239 651 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 MIRLET7F1-201ENST00000362202 87 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 RNY1P16-201ENST00000363063 111 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 RNY3P3-201ENST00000363816 102 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 RNU6-246P-201ENST00000384702 107 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 RNU6-913P-201ENST00000390913 95 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 AC015724.1-201ENST00000478577 156 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 RNU6-559P-201ENST00000516151 98 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 RNU6-1057P-201ENST00000517162 102 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 AC023158.1-201ENST00000561632 1025 ntBASIC-3.43□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.470-201ENST00000384307 117 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 MIR2113-201ENST00000459007 91 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 RNY1P1-201ENST00000364372 112 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 RNU6-282P-201ENST00000365357 103 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 AC078809.1-201ENST00000427601 140 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 AL009048.1-201ENST00000450437 298 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 MTND3P4-201ENST00000453537 303 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 AC010598.1-201ENST00000510378 103 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 AC026470.2-201ENST00000561492 181 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 AC109347.2-201ENST00000610220 349 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 U6.109-201ENST00000636749 87 ntBASIC-3.44□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.668-201ENST00000516233 93 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 RNU6-395P-201ENST00000365662 106 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.478-201ENST00000384358 107 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 MIR548I2-201ENST00000408348 149 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 SUMO2P5-201ENST00000506790 245 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 MTATP6P2-201ENST00000603319 678 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 RNU6-834P-201ENST00000362367 110 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.548-201ENST00000384656 105 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 SNORD77.3-201ENST00000391113 65 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 snoU13.8-201ENST00000458890 104 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 SNRPGP7-201ENST00000469016 106 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 AC008628.2-201ENST00000502605 298 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 AC109479.2-201ENST00000517842 174 ntBASIC-3.45□□□□□ -2.96
VPS13AQ96RL7 AC098479.1-201ENST00000609225 154 ntBASIC-3.46□□□□□ -2.96
VPS13AQ96RL7 AL359920.1-201ENST00000618332 176 ntBASIC-3.46□□□□□ -2.96
VPS13AQ96RL7 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-3.46□□□□□ -2.96
VPS13AQ96RL7 Y_RNA.467-201ENST00000384297 102 ntBASIC-3.46□□□□□ -2.96
VPS13AQ96RL7 RNU2-62P-201ENST00000410868 191 ntBASIC-3.46□□□□□ -2.96
VPS13AQ96RL7 RPL39P36-201ENST00000490784 156 ntBASIC-3.46□□□□□ -2.96
VPS13AQ96RL7 MTND5P42-201ENST00000637720 498 ntBASIC-3.46□□□□□ -2.96
VPS13AQ96RL7 RNU6-912P-201ENST00000363800 104 ntBASIC-3.47□□□□□ -2.96
VPS13AQ96RL7 AL512360.1-201ENST00000555346 234 ntBASIC-3.47□□□□□ -2.96
VPS13AQ96RL7 CYCSP46-201ENST00000423569 204 ntBASIC-3.47□□□□□ -2.96
VPS13AQ96RL7 NDUFB1P2-201ENST00000449477 176 ntBASIC-3.47□□□□□ -2.96
VPS13AQ96RL7 RNU6-1284P-201ENST00000363701 100 ntBASIC-3.47□□□□□ -2.97
VPS13AQ96RL7 RNU6-682P-201ENST00000363843 106 ntBASIC-3.47□□□□□ -2.97
VPS13AQ96RL7 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC-3.47□□□□□ -2.97
VPS13AQ96RL7 RNY1P13-201ENST00000365030 105 ntBASIC-3.48□□□□□ -2.97
VPS13AQ96RL7 Y_RNA.366-201ENST00000365540 102 ntBASIC-3.48□□□□□ -2.97
VPS13AQ96RL7 RNU6-1093P-201ENST00000391194 107 ntBASIC-3.48□□□□□ -2.97
VPS13AQ96RL7 Y_RNA.714-201ENST00000517065 90 ntBASIC-3.48□□□□□ -2.97
VPS13AQ96RL7 RNU6-430P-201ENST00000517078 107 ntBASIC-3.48□□□□□ -2.97
VPS13AQ96RL7 RNU6-527P-201ENST00000363425 104 ntBASIC-3.48□□□□□ -2.97
VPS13AQ96RL7 Y_RNA.604-201ENST00000410574 102 ntBASIC-3.48□□□□□ -2.97
VPS13AQ96RL7 SNORD42B-201ENST00000458893 67 ntBASIC-3.48□□□□□ -2.97
VPS13AQ96RL7 RNU7-195P-201ENST00000458793 62 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 RNU6-181P-201ENST00000363225 107 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 SNORA69-201ENST00000383895 132 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 RNU6-1052P-201ENST00000411398 104 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 RNU6-719P-201ENST00000516671 104 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 AC144568.1-201ENST00000520139 137 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 AC124303.1-201ENST00000605703 360 ntBASIC-3.49□□□□□ -2.97
VPS13AQ96RL7 AL607023.1-201ENST00000620045 248 ntBASIC-3.49□□□□□ -2.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms