Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MIR4771-2-201ENST00000577758 74 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 MIR4771-1-201ENST00000582617 74 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 MIR4676-201ENST00000583078 72 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 MIR5197-201ENST00000583721 112 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.812-201ENST00000610788 101 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.784-201ENST00000613803 101 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.787-201ENST00000616522 101 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.780-201ENST00000617336 101 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.801-201ENST00000619005 101 ntBASIC0.42□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.23-201ENST00000362496 106 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 SNORD18A-201ENST00000363753 72 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.430-201ENST00000384081 110 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 MIR588-201ENST00000384900 83 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 SNORD58.1-201ENST00000391313 66 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 RNU6-1165P-201ENST00000410119 107 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 RNA5SP261-201ENST00000410536 106 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 RNU2-11P-201ENST00000459191 187 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 RNU4-54P-201ENST00000516428 129 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 AC020891.4-201ENST00000605745 93 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 uc_338.6-201ENST00000613544 171 ntBASIC0.41□□□□□ -2.34
RPUSD4Q96CM3 Y_RNA.176-201ENST00000363815 109 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.262-201ENST00000364641 102 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 RNU6-728P-201ENST00000365375 104 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.354-201ENST00000365448 111 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 SNORA1-201ENST00000384107 130 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.512-201ENST00000384518 102 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 RNU6-738P-201ENST00000384531 106 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.562-201ENST00000384695 113 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 MIR520F-201ENST00000384824 87 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 MIR606-201ENST00000384851 96 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 MIR520H-201ENST00000385126 88 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 HMGN1P33-201ENST00000432945 451 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 MTATP8P1-201ENST00000467115 207 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.679-201ENST00000516416 91 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 AL442067.1-201ENST00000613261 223 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 MIR6717-201ENST00000622747 73 ntBASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.4□□□□□ -2.35
RPUSD4Q96CM3 MIR30D-201ENST00000362283 70 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 SNORA63-201ENST00000363450 132 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 RNU6-945P-201ENST00000383947 107 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 RNY1P8-201ENST00000383970 114 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.454-201ENST00000384224 113 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 RNU6-1237P-201ENST00000384777 107 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 MIR125B2-201ENST00000385128 89 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 MIR140-201ENST00000385282 100 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 MIR938-201ENST00000401216 83 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 SNORD100-201ENST00000408573 76 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 RNU6-1190P-201ENST00000410811 104 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.618-201ENST00000410949 107 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.622-201ENST00000411091 108 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 RNU7-80P-201ENST00000459562 61 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 MIR4643-201ENST00000577473 78 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 AC090897.1-201ENST00000580909 226 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 SNORD92-201ENST00000585078 85 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 MIR376A2-201ENST00000636782 80 ntBASIC0.39□□□□□ -2.35
RPUSD4Q96CM3 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 MIR18A-201ENST00000362310 71 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.199-201ENST00000364014 102 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 RNU6-1319P-201ENST00000390855 104 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 RNU6-747P-201ENST00000390928 104 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 RNU6-241P-201ENST00000391148 104 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 MIR548H3-201ENST00000408771 118 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 RNA5SP222-201ENST00000411039 105 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 AL358176.2-201ENST00000425769 204 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 RNU7-185P-201ENST00000459215 60 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 AC010332.2-201ENST00000613083 1904 ntBASIC0.38□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.121-201ENST00000363309 113 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 RNU6-978P-201ENST00000364371 103 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.416-201ENST00000384014 113 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 RNU6-342P-201ENST00000384521 104 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.556-201ENST00000384677 113 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 SNORA79-201ENST00000408376 140 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 SNORD127-201ENST00000458892 86 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 MIR3612-201ENST00000579753 87 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 MIR6841-201ENST00000637129 72 ntBASIC0.37□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.76-201ENST00000362931 109 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 RNU6-238P-201ENST00000363313 106 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.149-201ENST00000363558 117 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.191-201ENST00000363972 113 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.292-201ENST00000364904 97 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 RNY4P28-201ENST00000365281 93 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 SNORD114-22-201ENST00000365423 72 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.351-201ENST00000365436 96 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 Y_RNA.396-201ENST00000383949 103 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 MIR1276-201ENST00000408707 83 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 AL138752.1-201ENST00000452964 351 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 RPS29P1-201ENST00000465274 159 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 RNU6-561P-201ENST00000516222 102 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 MIR4714-201ENST00000580728 77 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 MIR4744-201ENST00000581563 82 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 AC091932.4-201ENST00000623386 200 ntBASIC0.36□□□□□ -2.35
RPUSD4Q96CM3 SNORD12C-201ENST00000386307 89 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 319 ms