Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 HSPE1P19-201ENST00000603327 295 ntBASIC1.56□□□□□ -2.16
CLRN3Q8NCR9 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.56□□□□□ -2.16
CLRN3Q8NCR9 Y_RNA.617-201ENST00000410920 90 ntBASIC1.55□□□□□ -2.16
CLRN3Q8NCR9 RNU6-602P-201ENST00000411155 105 ntBASIC1.55□□□□□ -2.16
CLRN3Q8NCR9 RNU7-164P-201ENST00000459221 62 ntBASIC1.55□□□□□ -2.16
CLRN3Q8NCR9 RN7SKP19-201ENST00000516016 252 ntBASIC1.55□□□□□ -2.16
CLRN3Q8NCR9 MIR4264-201ENST00000583520 66 ntBASIC1.55□□□□□ -2.16
CLRN3Q8NCR9 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 RNU6-235P-201ENST00000362644 107 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 RNA5SP126-201ENST00000365092 109 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 SNORA80D-201ENST00000384488 135 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 MIR23A-201ENST00000385245 73 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 RNU6-613P-201ENST00000410412 108 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 RNA5SP136-201ENST00000410906 107 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 POLR2J4-204ENST00000418424 324 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 SEPT14P17-201ENST00000617978 177 ntBASIC1.54□□□□□ -2.16
CLRN3Q8NCR9 MIR377-201ENST00000362145 69 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 Y_RNA.71-201ENST00000362892 104 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 Y_RNA.298-201ENST00000364960 107 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 SNORD116-14-201ENST00000383894 92 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 SNORD116-17-201ENST00000383929 92 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 SNORD116-15-201ENST00000384445 92 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 RNU6-1117P-201ENST00000384525 104 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 SNORD116-19-201ENST00000384729 92 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 RNU6-910P-201ENST00000390844 107 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 AL591704.2-201ENST00000421658 181 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 AC090844.1-201ENST00000422019 156 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 AC008267.6-201ENST00000441664 139 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 SNORA70.22-201ENST00000517160 124 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 MIR4435-1-201ENST00000582552 80 ntBASIC1.53□□□□□ -2.16
CLRN3Q8NCR9 SNORD113-1-201ENST00000365321 69 ntBASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 SNORD12-201ENST00000391002 90 ntBASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 AL356320.1-201ENST00000429616 163 ntBASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 RNU7-113P-201ENST00000459273 62 ntBASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 RNU6-62P-201ENST00000516526 102 ntBASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 RNU6-1061P-201ENST00000516530 99 ntBASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 MIR6516-201ENST00000630554 81 ntBASIC1.52□□□□□ -2.17
CLRN3Q8NCR9 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.218-201ENST00000364218 104 ntBASIC1.51□□□□□ -2.17
CLRN3Q8NCR9 SNORD48-201ENST00000364953 64 ntBASIC1.51□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.500-201ENST00000384466 111 ntBASIC1.51□□□□□ -2.17
CLRN3Q8NCR9 MRPL35P3-201ENST00000421557 364 ntBASIC1.51□□□□□ -2.17
CLRN3Q8NCR9 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.51□□□□□ -2.17
CLRN3Q8NCR9 RNY4P20-201ENST00000516678 93 ntBASIC1.51□□□□□ -2.17
CLRN3Q8NCR9 SNORD26-201ENST00000384147 75 ntBASIC1.5□□□□□ -2.17
CLRN3Q8NCR9 RNU4-53P-201ENST00000410828 140 ntBASIC1.5□□□□□ -2.17
CLRN3Q8NCR9 AC113410.1-201ENST00000505029 247 ntBASIC1.5□□□□□ -2.17
CLRN3Q8NCR9 RNU7-123P-201ENST00000515911 60 ntBASIC1.5□□□□□ -2.17
CLRN3Q8NCR9 RNU6-772P-201ENST00000516042 105 ntBASIC1.5□□□□□ -2.17
CLRN3Q8NCR9 RNU2-35P-201ENST00000516446 142 ntBASIC1.5□□□□□ -2.17
CLRN3Q8NCR9 RNU6-1234P-201ENST00000516877 103 ntBASIC1.5□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.127-201ENST00000363386 109 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.299-201ENST00000364973 94 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 SNORD58C-201ENST00000365223 64 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.330-201ENST00000365230 109 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 MIR222-201ENST00000384992 110 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 SNORA75.2-201ENST00000391138 150 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 SNORA75.3-201ENST00000391231 150 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 RNA5SP508-201ENST00000411327 119 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 SNORD79.1-201ENST00000516069 84 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 IGKV1-22-201ENST00000524313 326 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 AC004812.1-201ENST00000540773 146 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 MIR5089-201ENST00000580047 84 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 MIR4672-201ENST00000583126 81 ntBASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.49□□□□□ -2.17
CLRN3Q8NCR9 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 SNORD115-2-201ENST00000362842 82 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 SNORA16.1-201ENST00000364597 132 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 SNORD115-20-201ENST00000365099 82 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.346-201ENST00000365385 112 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 SNORA25-201ENST00000384384 134 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.531-201ENST00000384589 121 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 MIR759-201ENST00000390224 91 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 MIR1263-201ENST00000408324 86 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 RPS29P23-201ENST00000458635 123 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 RNU7-90P-201ENST00000459216 62 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 RNU7-21P-201ENST00000459430 62 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 COX6CP6-201ENST00000490840 228 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.712-201ENST00000517011 92 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 MIR6852-201ENST00000621699 66 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 MIR6873-201ENST00000622788 63 ntBASIC1.48□□□□□ -2.17
CLRN3Q8NCR9 RNU4-82P-201ENST00000362443 140 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.168-201ENST00000363740 102 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.171-201ENST00000363760 102 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.213-201ENST00000364178 111 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 Y_RNA.363-201ENST00000365529 113 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 AC244023.1-201ENST00000426884 112 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 RNU6-1333P-201ENST00000516162 93 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 RNU6-781P-201ENST00000516377 101 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 RNU6-659P-201ENST00000516454 104 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 MIR4419B-201ENST00000577260 68 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 MIR4513-201ENST00000581077 86 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 AC242498.1-201ENST00000604134 111 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 AC025166.1-201ENST00000612411 163 ntBASIC1.47□□□□□ -2.17
CLRN3Q8NCR9 AL590808.1-201ENST00000618696 141 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms