Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RNA5SP148-201ENST00000516527 94 ntBASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 AL020996.3-201ENST00000606617 222 ntBASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 AC243994.1-201ENST00000618627 109 ntBASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SH3RF1Q7Z6J0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 RNU1-109P-201ENST00000383960 147 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 SNORA24-201ENST00000384096 131 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 AL138827.1-201ENST00000402666 306 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 Z98742.3-201ENST00000418637 326 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 RPL31P63-201ENST00000422565 375 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 BX510359.4-201ENST00000423750 193 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 UBBP3-201ENST00000445497 241 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 RNU7-73P-201ENST00000458743 63 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 SNORA9.3-201ENST00000516383 129 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 RNU6-56P-201ENST00000516986 93 ntBASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
SH3RF1Q7Z6J0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 MIR26A1-201ENST00000362205 77 ntBASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 RNU6-1031P-201ENST00000384773 107 ntBASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 SNORA3.2-201ENST00000408221 125 ntBASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 RNU2-7P-201ENST00000410794 178 ntBASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 RNU7-2P-201ENST00000516096 62 ntBASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 RNU6-539P-201ENST00000516665 103 ntBASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
SH3RF1Q7Z6J0 U8.2-201ENST00000363156 134 ntBASIC3.1□□□□□ -1.91
SH3RF1Q7Z6J0 SNORD56.5-201ENST00000364281 72 ntBASIC3.1□□□□□ -1.91
SH3RF1Q7Z6J0 MIR9-1-201ENST00000385198 89 ntBASIC3.1□□□□□ -1.91
SH3RF1Q7Z6J0 RNU6-1190P-201ENST00000410811 104 ntBASIC3.1□□□□□ -1.91
SH3RF1Q7Z6J0 snoU13.15-201ENST00000459407 104 ntBASIC3.1□□□□□ -1.91
SH3RF1Q7Z6J0 SNORA31.26-201ENST00000517250 137 ntBASIC3.1□□□□□ -1.91
SH3RF1Q7Z6J0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 RNU11-3P-201ENST00000391111 133 ntBASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 AC104389.3-201ENST00000445629 235 ntBASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 RPS29P28-201ENST00000446439 141 ntBASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 AC093850.1-201ENST00000454121 251 ntBASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 AC005336.3-201ENST00000623833 2679 ntBASIC3.09□□□□□ -1.91
SH3RF1Q7Z6J0 AC108206.1-201ENST00000570186 4159 ntBASIC3.08□□□□□ -1.92
SH3RF1Q7Z6J0 SNORD115-37-201ENST00000363768 82 ntBASIC3.08□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-913P-201ENST00000390913 95 ntBASIC3.08□□□□□ -1.92
SH3RF1Q7Z6J0 SNORD123-201ENST00000459473 70 ntBASIC3.08□□□□□ -1.92
SH3RF1Q7Z6J0 MIR548AR-201ENST00000582191 57 ntBASIC3.08□□□□□ -1.92
SH3RF1Q7Z6J0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-478P-201ENST00000363904 110 ntBASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 Y_RNA.567-201ENST00000384736 106 ntBASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-1307P-201ENST00000391012 103 ntBASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-129P-201ENST00000391022 107 ntBASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 AC245047.7-201ENST00000440265 293 ntBASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 AC022202.1-201ENST00000613515 211 ntBASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 Y_RNA.788-201ENST00000622394 112 ntBASIC3.07□□□□□ -1.92
SH3RF1Q7Z6J0 Y_RNA.354-201ENST00000365448 111 ntBASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 Y_RNA.537-201ENST00000384626 109 ntBASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 MIR34C-201ENST00000384831 77 ntBASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 MIR520A-201ENST00000384862 85 ntBASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 MIR597-201ENST00000384968 97 ntBASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 RNA5SP21-201ENST00000410917 96 ntBASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 ZNF658B-202ENST00000615961 3375 ntBASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 AC093010.3-201ENST00000570269 15214 ntBASIC3.06□□□□□ -1.92
SH3RF1Q7Z6J0 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 SNORD28B-201ENST00000390993 75 ntBASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 MIR548G-201ENST00000408442 89 ntBASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 snoU13.16-201ENST00000459350 104 ntBASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 AL513043.2-201ENST00000573941 143 ntBASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 AL513423.1-201ENST00000621695 132 ntBASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-1094P-201ENST00000362416 104 ntBASIC3.04□□□□□ -1.92
SH3RF1Q7Z6J0 Y_RNA.57-201ENST00000362806 113 ntBASIC3.04□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-865P-201ENST00000364772 107 ntBASIC3.04□□□□□ -1.92
SH3RF1Q7Z6J0 MIR206-201ENST00000384872 86 ntBASIC3.04□□□□□ -1.92
SH3RF1Q7Z6J0 MIR4709-201ENST00000577272 72 ntBASIC3.04□□□□□ -1.92
SH3RF1Q7Z6J0 RNA5SP289-201ENST00000362332 137 ntBASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-624P-201ENST00000363411 107 ntBASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 RNU1-98P-201ENST00000458992 160 ntBASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-826P-201ENST00000516827 104 ntBASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 AC020891.4-201ENST00000605745 93 ntBASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 RNU6-90P-201ENST00000606352 106 ntBASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.03□□□□□ -1.92
SH3RF1Q7Z6J0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC3.02□□□□□ -1.93
SH3RF1Q7Z6J0 Y_RNA.173-201ENST00000363776 113 ntBASIC3.02□□□□□ -1.93
SH3RF1Q7Z6J0 SNORA40.18-201ENST00000391200 128 ntBASIC3.02□□□□□ -1.93
SH3RF1Q7Z6J0 HMGN1P33-201ENST00000432945 451 ntBASIC3.02□□□□□ -1.93
SH3RF1Q7Z6J0 SNORA25.13-201ENST00000516395 103 ntBASIC3.02□□□□□ -1.93
SH3RF1Q7Z6J0 SCARNA16.3-201ENST00000516595 184 ntBASIC3.02□□□□□ -1.93
SH3RF1Q7Z6J0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms