Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNU6-259P-201ENST00000383999 107 ntBASIC-0.7□□□□□ -2.52
FOXA3P55318 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.7□□□□□ -2.52
FOXA3P55318 MIR204-201ENST00000385200 110 ntBASIC-0.7□□□□□ -2.52
FOXA3P55318 AL160004.2-201ENST00000432935 350 ntBASIC-0.7□□□□□ -2.52
FOXA3P55318 AL021707.8-201ENST00000609428 183 ntBASIC-0.7□□□□□ -2.52
FOXA3P55318 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 SNORD24-201ENST00000383884 75 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 MIR604-201ENST00000384880 94 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC-0.71□□□□□ -2.52
FOXA3P55318 RPS3AP52-201ENST00000435639 297 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC-0.71□□□□□ -2.52
FOXA3P55318 SNORD77.4-201ENST00000516158 81 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 RNU6-365P-201ENST00000517113 106 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 MIR4636-201ENST00000582271 80 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.71□□□□□ -2.52
FOXA3P55318 AC005899.2-201ENST00000584353 90 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 AC063944.3-201ENST00000609969 533 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 PISRT1.1-201ENST00000616930 107 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 AC099654.14-201ENST00000638599 341 ntBASIC-0.71□□□□□ -2.52
FOXA3P55318 Y_RNA.14-201ENST00000362415 103 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 RNU6-888P-201ENST00000363010 101 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 RNU6-1205P-201ENST00000363625 106 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 RNU6-1090P-201ENST00000364065 94 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 RNU6-1042P-201ENST00000384204 107 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 MIR181B2-201ENST00000385004 89 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.72□□□□□ -2.52
FOXA3P55318 MIR548F5-201ENST00000408421 86 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 Y_RNA.605-201ENST00000410577 105 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC-0.72□□□□□ -2.52
FOXA3P55318 Y_RNA.631-201ENST00000459607 101 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 RNU7-79P-201ENST00000516082 62 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 RNU7-110P-201ENST00000516891 62 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.72□□□□□ -2.52
FOXA3P55318 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-0.72□□□□□ -2.52
FOXA3P55318 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.72□□□□□ -2.52
FOXA3P55318 MIR4662B-201ENST00000579498 81 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-0.72□□□□□ -2.52
FOXA3P55318 uc_338.10-201ENST00000621872 182 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 U6.92-201ENST00000636464 89 ntBASIC-0.72□□□□□ -2.52
FOXA3P55318 MTND5P32-201ENST00000560711 1802 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 Y_RNA.27-201ENST00000362540 103 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 SNORA22.1-201ENST00000362701 134 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 RNU4-80P-201ENST00000363200 141 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 RNU6-899P-201ENST00000363947 107 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 SNORA20-201ENST00000384662 132 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 Y_RNA.577-201ENST00000384794 101 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 MIR224-201ENST00000384889 81 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 RNU6-373P-201ENST00000411247 98 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 RNU6-415P-201ENST00000516252 97 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-0.73□□□□□ -2.53
FOXA3P55318 AC090582.1-201ENST00000636321 199 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 MIR1321-201ENST00000637766 79 ntBASIC-0.73□□□□□ -2.53
FOXA3P55318 Y_RNA.251-201ENST00000364551 99 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 RNU6-593P-201ENST00000364716 112 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 RNU6-144P-201ENST00000383951 107 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 RNU6-1119P-201ENST00000384349 108 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 RNU2-66P-201ENST00000410650 161 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 RNU6-307P-201ENST00000516743 106 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 RNU6-1213P-201ENST00000517075 94 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 AC144568.1-201ENST00000520139 137 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 MIR548H5-201ENST00000580314 60 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 AC091932.4-201ENST00000623386 200 ntBASIC-0.74□□□□□ -2.53
FOXA3P55318 RNY1P2-201ENST00000364820 117 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 Y_RNA.383-201ENST00000383855 97 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 MIR599-201ENST00000385069 95 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 MIR548K-201ENST00000408406 116 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 RNU6-735P-201ENST00000410612 107 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 MTND2P9-201ENST00000422293 931 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 AC096644.2-201ENST00000429278 159 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 RNU6-397P-201ENST00000516226 104 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-0.75□□□□□ -2.53
FOXA3P55318 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-0.75□□□□□ -2.53
FOXA3P55318 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 MIR376A2-201ENST00000636782 80 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 MIR6841-201ENST00000637129 72 ntBASIC-0.75□□□□□ -2.53
FOXA3P55318 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 RNU1-141P-201ENST00000364623 158 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 RNU6-901P-201ENST00000384593 106 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 MIR9-2-201ENST00000384838 87 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 MIR628-201ENST00000385229 95 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 MT-TQ-201ENST00000387372 72 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 RNU6-763P-201ENST00000390865 106 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 RNU7-80P-201ENST00000459562 61 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 AC021146.6-201ENST00000514659 117 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 RNU4ATAC7P-201ENST00000516280 125 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 RNU6-175P-201ENST00000516896 107 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 RNU6-264P-201ENST00000517134 104 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 MIR3920-201ENST00000581751 86 ntBASIC-0.76□□□□□ -2.53
FOXA3P55318 MIR3611-201ENST00000584484 83 ntBASIC-0.76□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms