Protein–RNA interactions for Protein: P49917

LIG4, DNA ligase 4, humanhuman

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4P49917 AL138752.1-201ENST00000452964 351 ntBASIC0.72□□□□□ -2.29
LIG4P49917 RNU7-96P-201ENST00000459535 64 ntBASIC0.72□□□□□ -2.29
LIG4P49917 COX6CP6-201ENST00000490840 228 ntBASIC0.72□□□□□ -2.29
LIG4P49917 RNU6-1223P-201ENST00000517124 104 ntBASIC0.72□□□□□ -2.29
LIG4P49917 AC004812.1-201ENST00000540773 146 ntBASIC0.72□□□□□ -2.29
LIG4P49917 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.72□□□□□ -2.29
LIG4P49917 AL117187.1-201ENST00000555482 181 ntBASIC0.72□□□□□ -2.29
LIG4P49917 AC011195.1-201ENST00000578177 177 ntBASIC0.72□□□□□ -2.29
LIG4P49917 AC097639.2-201ENST00000603159 172 ntBASIC0.72□□□□□ -2.29
LIG4P49917 SNORD38B-202ENST00000625943 69 ntBASIC0.72□□□□□ -2.29
LIG4P49917 Y_RNA.352-201ENST00000365439 102 ntBASIC0.71□□□□□ -2.3
LIG4P49917 RNU6-1189P-201ENST00000383958 107 ntBASIC0.71□□□□□ -2.3
LIG4P49917 Y_RNA.416-201ENST00000384014 113 ntBASIC0.71□□□□□ -2.3
LIG4P49917 RNU6-381P-201ENST00000391259 108 ntBASIC0.71□□□□□ -2.3
LIG4P49917 RNU6-998P-201ENST00000515894 101 ntBASIC0.71□□□□□ -2.3
LIG4P49917 MIR4643-201ENST00000577473 78 ntBASIC0.71□□□□□ -2.3
LIG4P49917 MIR4771-2-201ENST00000577758 74 ntBASIC0.71□□□□□ -2.3
LIG4P49917 MIR4771-1-201ENST00000582617 74 ntBASIC0.71□□□□□ -2.3
LIG4P49917 SNORA4-201ENST00000584302 138 ntBASIC0.71□□□□□ -2.3
LIG4P49917 RNU6-653P-201ENST00000363074 106 ntBASIC0.7□□□□□ -2.3
LIG4P49917 SNORA1.1-201ENST00000364671 133 ntBASIC0.7□□□□□ -2.3
LIG4P49917 RNU4-17P-201ENST00000365598 141 ntBASIC0.7□□□□□ -2.3
LIG4P49917 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.7□□□□□ -2.3
LIG4P49917 AC015818.7-201ENST00000428754 109 ntBASIC0.7□□□□□ -2.3
LIG4P49917 AC087499.7-201ENST00000441958 109 ntBASIC0.7□□□□□ -2.3
LIG4P49917 MIR5000-201ENST00000577717 103 ntBASIC0.7□□□□□ -2.3
LIG4P49917 AC011921.3-201ENST00000605540 361 ntBASIC0.7□□□□□ -2.3
LIG4P49917 RMST_2.1-201ENST00000617263 136 ntBASIC0.7□□□□□ -2.3
LIG4P49917 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
LIG4P49917 Y_RNA.7-201ENST00000362352 102 ntBASIC0.69□□□□□ -2.3
LIG4P49917 Y_RNA.47-201ENST00000362697 108 ntBASIC0.69□□□□□ -2.3
LIG4P49917 Y_RNA.54-201ENST00000362766 105 ntBASIC0.69□□□□□ -2.3
LIG4P49917 SNORA1-201ENST00000384107 130 ntBASIC0.69□□□□□ -2.3
LIG4P49917 Y_RNA.440-201ENST00000384120 114 ntBASIC0.69□□□□□ -2.3
LIG4P49917 Y_RNA.459-201ENST00000384251 102 ntBASIC0.69□□□□□ -2.3
LIG4P49917 RNU6-738P-201ENST00000384531 106 ntBASIC0.69□□□□□ -2.3
LIG4P49917 RNU6-1011P-201ENST00000384668 107 ntBASIC0.69□□□□□ -2.3
LIG4P49917 SNORD77.3-201ENST00000391113 65 ntBASIC0.69□□□□□ -2.3
LIG4P49917 MIR548I3-201ENST00000408378 149 ntBASIC0.69□□□□□ -2.3
LIG4P49917 RNU2-11P-201ENST00000459191 187 ntBASIC0.69□□□□□ -2.3
LIG4P49917 RNU6-977P-201ENST00000516411 103 ntBASIC0.69□□□□□ -2.3
LIG4P49917 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.68□□□□□ -2.3
LIG4P49917 Y_RNA.23-201ENST00000362496 106 ntBASIC0.68□□□□□ -2.3
LIG4P49917 Y_RNA.149-201ENST00000363558 117 ntBASIC0.68□□□□□ -2.3
LIG4P49917 Y_RNA.262-201ENST00000364641 102 ntBASIC0.68□□□□□ -2.3
LIG4P49917 Y_RNA.277-201ENST00000364754 102 ntBASIC0.68□□□□□ -2.3
LIG4P49917 MIR520F-201ENST00000384824 87 ntBASIC0.68□□□□□ -2.3
LIG4P49917 RNU6-1190P-201ENST00000410811 104 ntBASIC0.68□□□□□ -2.3
LIG4P49917 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.68□□□□□ -2.3
LIG4P49917 RNU6-561P-201ENST00000516222 102 ntBASIC0.68□□□□□ -2.3
LIG4P49917 AL442067.1-201ENST00000613261 223 ntBASIC0.68□□□□□ -2.3
LIG4P49917 uc_338.6-201ENST00000613544 171 ntBASIC0.68□□□□□ -2.3
LIG4P49917 MIR6740-201ENST00000618268 113 ntBASIC0.68□□□□□ -2.3
LIG4P49917 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
LIG4P49917 RNU6-1309P-201ENST00000363305 108 ntBASIC0.67□□□□□ -2.3
LIG4P49917 MIR568-201ENST00000385036 95 ntBASIC0.67□□□□□ -2.3
LIG4P49917 MIR520H-201ENST00000385126 88 ntBASIC0.67□□□□□ -2.3
LIG4P49917 RNU2-38P-201ENST00000410856 79 ntBASIC0.67□□□□□ -2.3
LIG4P49917 RNA5SP222-201ENST00000411039 105 ntBASIC0.67□□□□□ -2.3
LIG4P49917 RNU6-602P-201ENST00000411155 105 ntBASIC0.67□□□□□ -2.3
LIG4P49917 AL358176.2-201ENST00000425769 204 ntBASIC0.67□□□□□ -2.3
LIG4P49917 AC010332.2-201ENST00000613083 1904 ntBASIC0.66□□□□□ -2.3
LIG4P49917 MIR342-201ENST00000362212 99 ntBASIC0.66□□□□□ -2.3
LIG4P49917 Y_RNA.76-201ENST00000362931 109 ntBASIC0.66□□□□□ -2.3
LIG4P49917 RNU6-728P-201ENST00000365375 104 ntBASIC0.66□□□□□ -2.3
LIG4P49917 MIR588-201ENST00000384900 83 ntBASIC0.66□□□□□ -2.3
LIG4P49917 SNORA79-201ENST00000408376 140 ntBASIC0.66□□□□□ -2.3
LIG4P49917 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.66□□□□□ -2.3
LIG4P49917 MIR4676-201ENST00000583078 72 ntBASIC0.66□□□□□ -2.3
LIG4P49917 AC020891.4-201ENST00000605745 93 ntBASIC0.66□□□□□ -2.3
LIG4P49917 RNU6-103P-201ENST00000363686 107 ntBASIC0.65□□□□□ -2.31
LIG4P49917 Y_RNA.292-201ENST00000364904 97 ntBASIC0.65□□□□□ -2.31
LIG4P49917 MIR573-201ENST00000384964 99 ntBASIC0.65□□□□□ -2.31
LIG4P49917 MTND1P19-201ENST00000511780 315 ntBASIC0.65□□□□□ -2.31
LIG4P49917 MIR3129-201ENST00000581095 76 ntBASIC0.65□□□□□ -2.31
LIG4P49917 MIR4804-201ENST00000581683 73 ntBASIC0.65□□□□□ -2.31
LIG4P49917 MIR376A2-201ENST00000636782 80 ntBASIC0.65□□□□□ -2.31
LIG4P49917 MIR302B-201ENST00000362188 73 ntBASIC0.64□□□□□ -2.31
LIG4P49917 Y_RNA.288-201ENST00000364854 92 ntBASIC0.64□□□□□ -2.31
LIG4P49917 Y_RNA.351-201ENST00000365436 96 ntBASIC0.64□□□□□ -2.31
LIG4P49917 Y_RNA.542-201ENST00000384641 111 ntBASIC0.64□□□□□ -2.31
LIG4P49917 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
LIG4P49917 MIR548H3-201ENST00000408771 118 ntBASIC0.64□□□□□ -2.31
LIG4P49917 RNU6-1165P-201ENST00000410119 107 ntBASIC0.64□□□□□ -2.31
LIG4P49917 MIR18B-201ENST00000454574 71 ntBASIC0.64□□□□□ -2.31
LIG4P49917 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.64□□□□□ -2.31
LIG4P49917 SNORD127-201ENST00000458892 86 ntBASIC0.64□□□□□ -2.31
LIG4P49917 snoU13.2-201ENST00000459201 104 ntBASIC0.64□□□□□ -2.31
LIG4P49917 MIR6515-201ENST00000619843 57 ntBASIC0.64□□□□□ -2.31
LIG4P49917 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
LIG4P49917 Y_RNA.133-201ENST00000363428 110 ntBASIC0.63□□□□□ -2.31
LIG4P49917 SNORA36.2-201ENST00000384004 127 ntBASIC0.63□□□□□ -2.31
LIG4P49917 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.63□□□□□ -2.31
LIG4P49917 RNU4-43P-201ENST00000410628 137 ntBASIC0.63□□□□□ -2.31
LIG4P49917 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.63□□□□□ -2.31
LIG4P49917 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.63□□□□□ -2.31
LIG4P49917 MIR5197-201ENST00000583721 112 ntBASIC0.63□□□□□ -2.31
LIG4P49917 AL360085.1-201ENST00000604713 532 ntBASIC0.63□□□□□ -2.31
LIG4P49917 MIR7111-201ENST00000619751 72 ntBASIC0.63□□□□□ -2.31
LIG4P49917 RNY1-201ENST00000364228 113 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms