Protein–RNA interactions for Protein: P49754

VPS41, Vacuolar protein sorting-associated protein 41 homolog, humanhuman

Predictions only

Length 854 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41P49754 SNORA67.5-201ENST00000391036 107 ntBASIC1.43□□□□□ -2.18
VPS41P49754 snoU13.23-201ENST00000458863 104 ntBASIC1.43□□□□□ -2.18
VPS41P49754 RNU2-11P-201ENST00000459191 187 ntBASIC1.43□□□□□ -2.18
VPS41P49754 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.43□□□□□ -2.18
VPS41P49754 RNU6-958P-201ENST00000516995 106 ntBASIC1.43□□□□□ -2.18
VPS41P49754 AP003716.2-201ENST00000528260 108 ntBASIC1.43□□□□□ -2.18
VPS41P49754 U7.2-201ENST00000607576 63 ntBASIC1.43□□□□□ -2.18
VPS41P49754 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
VPS41P49754 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
VPS41P49754 Y_RNA.454-201ENST00000384224 113 ntBASIC1.42□□□□□ -2.18
VPS41P49754 MTATP6P21-201ENST00000440681 189 ntBASIC1.42□□□□□ -2.18
VPS41P49754 RNU7-67P-201ENST00000459003 62 ntBASIC1.42□□□□□ -2.18
VPS41P49754 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.42□□□□□ -2.18
VPS41P49754 AL022345.2-201ENST00000606307 135 ntBASIC1.42□□□□□ -2.18
VPS41P49754 MIR4251-201ENST00000635819 61 ntBASIC1.42□□□□□ -2.18
VPS41P49754 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
VPS41P49754 AL596211.1-201ENST00000569873 2277 ntBASIC1.41□□□□□ -2.18
VPS41P49754 RNU1-133P-201ENST00000364867 167 ntBASIC1.41□□□□□ -2.18
VPS41P49754 RNU6-81P-201ENST00000365608 104 ntBASIC1.41□□□□□ -2.18
VPS41P49754 SNORD18B-201ENST00000365659 72 ntBASIC1.41□□□□□ -2.18
VPS41P49754 MIR150-201ENST00000385048 84 ntBASIC1.41□□□□□ -2.18
VPS41P49754 MIR764-201ENST00000390811 85 ntBASIC1.41□□□□□ -2.18
VPS41P49754 MIR1302-7-201ENST00000408841 72 ntBASIC1.41□□□□□ -2.18
VPS41P49754 RNU4-61P-201ENST00000411243 107 ntBASIC1.41□□□□□ -2.18
VPS41P49754 TMSB4XP3-201ENST00000445144 114 ntBASIC1.41□□□□□ -2.18
VPS41P49754 snoU13.16-201ENST00000459350 104 ntBASIC1.41□□□□□ -2.18
VPS41P49754 RNU7-53P-201ENST00000516705 60 ntBASIC1.41□□□□□ -2.18
VPS41P49754 MIR548AO-201ENST00000579992 96 ntBASIC1.41□□□□□ -2.18
VPS41P49754 MIR8055-201ENST00000610739 97 ntBASIC1.41□□□□□ -2.18
VPS41P49754 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
VPS41P49754 MIR342-201ENST00000362212 99 ntBASIC1.4□□□□□ -2.19
VPS41P49754 RNU1-17P-201ENST00000363022 152 ntBASIC1.4□□□□□ -2.19
VPS41P49754 RNA5SP48-201ENST00000363969 126 ntBASIC1.4□□□□□ -2.19
VPS41P49754 Y_RNA.294-201ENST00000364916 102 ntBASIC1.4□□□□□ -2.19
VPS41P49754 SNORA26.6-201ENST00000391256 115 ntBASIC1.4□□□□□ -2.19
VPS41P49754 AC009474.2-201ENST00000451383 136 ntBASIC1.4□□□□□ -2.19
VPS41P49754 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.4□□□□□ -2.19
VPS41P49754 RNU6-947P-201ENST00000516264 106 ntBASIC1.4□□□□□ -2.19
VPS41P49754 RNU6-406P-201ENST00000516470 107 ntBASIC1.4□□□□□ -2.19
VPS41P49754 Y_RNA.692-201ENST00000516627 105 ntBASIC1.4□□□□□ -2.19
VPS41P49754 RNU6-113P-201ENST00000516653 101 ntBASIC1.4□□□□□ -2.19
VPS41P49754 AC015712.3-201ENST00000559380 164 ntBASIC1.4□□□□□ -2.19
VPS41P49754 HSPE1P19-201ENST00000603327 295 ntBASIC1.4□□□□□ -2.19
VPS41P49754 AP000942.3-201ENST00000603702 160 ntBASIC1.4□□□□□ -2.19
VPS41P49754 AL020996.3-201ENST00000606617 222 ntBASIC1.4□□□□□ -2.19
VPS41P49754 AC011603.4-201ENST00000611325 277 ntBASIC1.4□□□□□ -2.19
VPS41P49754 TUG1_4.1-201ENST00000619464 181 ntBASIC1.4□□□□□ -2.19
VPS41P49754 AL121890.5-201ENST00000620848 304 ntBASIC1.4□□□□□ -2.19
VPS41P49754 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.39□□□□□ -2.19
VPS41P49754 RNY1P6-201ENST00000384193 109 ntBASIC1.39□□□□□ -2.19
VPS41P49754 RNU6-1190P-201ENST00000410811 104 ntBASIC1.39□□□□□ -2.19
VPS41P49754 RNU6-1054P-201ENST00000411293 104 ntBASIC1.39□□□□□ -2.19
VPS41P49754 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.39□□□□□ -2.19
VPS41P49754 AL133373.1-201ENST00000497098 94 ntBASIC1.39□□□□□ -2.19
VPS41P49754 RNU7-70P-201ENST00000516941 66 ntBASIC1.39□□□□□ -2.19
VPS41P49754 CYP3A52P-201ENST00000563326 91 ntBASIC1.39□□□□□ -2.19
VPS41P49754 MIR4524B-201ENST00000581569 115 ntBASIC1.39□□□□□ -2.19
VPS41P49754 AC108081.1-201ENST00000604358 221 ntBASIC1.39□□□□□ -2.19
VPS41P49754 AL353997.5-201ENST00000618886 171 ntBASIC1.39□□□□□ -2.19
VPS41P49754 AC091895.1-201ENST00000624494 256 ntBASIC1.39□□□□□ -2.19
VPS41P49754 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.39□□□□□ -2.19
VPS41P49754 RPL39P39-201ENST00000455840 151 ntBASIC1.38□□□□□ -2.19
VPS41P49754 RNU7-45P-201ENST00000459460 63 ntBASIC1.38□□□□□ -2.19
VPS41P49754 DNAJC19P9-201ENST00000555084 351 ntBASIC1.38□□□□□ -2.19
VPS41P49754 AC068338.1-201ENST00000565567 176 ntBASIC1.38□□□□□ -2.19
VPS41P49754 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.38□□□□□ -2.19
VPS41P49754 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.37□□□□□ -2.19
VPS41P49754 MIR302B-201ENST00000362188 73 ntBASIC1.37□□□□□ -2.19
VPS41P49754 Y_RNA.114-201ENST00000363265 113 ntBASIC1.37□□□□□ -2.19
VPS41P49754 SNORD113-1-201ENST00000365321 69 ntBASIC1.37□□□□□ -2.19
VPS41P49754 MIR758-201ENST00000390227 88 ntBASIC1.37□□□□□ -2.19
VPS41P49754 RNU6-1319P-201ENST00000390855 104 ntBASIC1.37□□□□□ -2.19
VPS41P49754 RNU6-747P-201ENST00000390928 104 ntBASIC1.37□□□□□ -2.19
VPS41P49754 RNU6-241P-201ENST00000391148 104 ntBASIC1.37□□□□□ -2.19
VPS41P49754 RNU6-177P-201ENST00000411257 104 ntBASIC1.37□□□□□ -2.19
VPS41P49754 RN7SKP88-201ENST00000516847 250 ntBASIC1.37□□□□□ -2.19
VPS41P49754 RNU6-971P-201ENST00000516920 106 ntBASIC1.37□□□□□ -2.19
VPS41P49754 MIR4303-201ENST00000581299 66 ntBASIC1.37□□□□□ -2.19
VPS41P49754 7SK.8-201ENST00000612110 250 ntBASIC1.37□□□□□ -2.19
VPS41P49754 7SK.11-201ENST00000615477 250 ntBASIC1.37□□□□□ -2.19
VPS41P49754 7SK.13-201ENST00000622040 250 ntBASIC1.37□□□□□ -2.19
VPS41P49754 Z97988.1-201ENST00000637697 135 ntBASIC1.37□□□□□ -2.19
VPS41P49754 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
VPS41P49754 SNORA25.3-201ENST00000363205 127 ntBASIC1.36□□□□□ -2.19
VPS41P49754 RNU6-482P-201ENST00000391068 107 ntBASIC1.36□□□□□ -2.19
VPS41P49754 MIR1185-1-201ENST00000408598 86 ntBASIC1.36□□□□□ -2.19
VPS41P49754 AC090844.1-201ENST00000422019 156 ntBASIC1.36□□□□□ -2.19
VPS41P49754 HMGN1P33-201ENST00000432945 451 ntBASIC1.36□□□□□ -2.19
VPS41P49754 AL158147.1-201ENST00000443970 75 ntBASIC1.36□□□□□ -2.19
VPS41P49754 IGKV1-22-201ENST00000524313 326 ntBASIC1.36□□□□□ -2.19
VPS41P49754 Y_RNA.757-201ENST00000578934 114 ntBASIC1.36□□□□□ -2.19
VPS41P49754 PRELID3BP2-201ENST00000605362 201 ntBASIC1.36□□□□□ -2.19
VPS41P49754 MIR6717-201ENST00000622747 73 ntBASIC1.36□□□□□ -2.19
VPS41P49754 AC021613.1-201ENST00000623880 111 ntBASIC1.36□□□□□ -2.19
VPS41P49754 MIR6841-201ENST00000637129 72 ntBASIC1.36□□□□□ -2.19
VPS41P49754 AC132825.6-201ENST00000638861 357 ntBASIC1.36□□□□□ -2.19
VPS41P49754 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.36□□□□□ -2.19
VPS41P49754 RNA5SP264-201ENST00000363115 107 ntBASIC1.35□□□□□ -2.19
VPS41P49754 Y_RNA.218-201ENST00000364218 104 ntBASIC1.35□□□□□ -2.19
VPS41P49754 MIR539-201ENST00000365690 78 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms