Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-781P-201ENST00000516377 101 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 MIR3935-201ENST00000583472 104 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.39□□□□□ -2.19
HOXD3P31249 snoU13.31-201ENST00000607291 104 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 AC243994.1-201ENST00000618627 109 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
HOXD3P31249 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.39□□□□□ -2.19
HOXD3P31249 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
HOXD3P31249 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.38□□□□□ -2.19
HOXD3P31249 SNORA22C-201ENST00000384614 134 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 MIR548I2-201ENST00000408348 149 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 RNU6-1190P-201ENST00000410811 104 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 BTF3P4-201ENST00000418852 495 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 AL035398.1-201ENST00000430869 322 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 RPS29P29-201ENST00000456396 171 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 RNU7-80P-201ENST00000459562 61 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 RN7SL274P-201ENST00000492268 272 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 RPS29P11-201ENST00000496507 171 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 RNU6-322P-201ENST00000516010 103 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 RN7SKP19-201ENST00000516016 252 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 AL513534.2-201ENST00000603836 250 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.38□□□□□ -2.19
HOXD3P31249 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.38□□□□□ -2.19
HOXD3P31249 Y_RNA.127-201ENST00000363386 109 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 Y_RNA.226-201ENST00000364337 114 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 SNORD116-14-201ENST00000383894 92 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 SNORD116-17-201ENST00000383929 92 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 SNORD116-15-201ENST00000384445 92 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 SNORD116-19-201ENST00000384729 92 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXD3P31249 snoU13.25-201ENST00000458945 104 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 RNU7-96P-201ENST00000459535 64 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 AC079140.2-201ENST00000506193 142 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 RNU6-659P-201ENST00000516454 104 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 AL096861.1-201ENST00000610899 123 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 AC008133.2-201ENST00000624540 351 ntBASIC1.37□□□□□ -2.19
HOXD3P31249 MIR302B-201ENST00000362188 73 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 RNU6-690P-201ENST00000365242 106 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 SNORA24-201ENST00000384096 131 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 RNY1P6-201ENST00000384193 109 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 Y_RNA.537-201ENST00000384626 109 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 RNU6-1168P-201ENST00000390831 104 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 RNU6-1154P-201ENST00000391001 104 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 RNU4-62P-201ENST00000410125 130 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 Y_RNA.617-201ENST00000410920 90 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 HMGN1P33-201ENST00000432945 451 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 RNU6-62P-201ENST00000516526 102 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 RNU6-1061P-201ENST00000516530 99 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 RNU7-43P-201ENST00000516554 64 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 AC133485.4-201ENST00000561835 220 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 AC138907.4-201ENST00000570107 226 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 MIR4419B-201ENST00000577260 68 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 WWP1P1-201ENST00000466609 2769 ntBASIC1.36□□□□□ -2.19
HOXD3P31249 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.35□□□□□ -2.19
HOXD3P31249 Y_RNA.454-201ENST00000384224 113 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 SNORA51.10-201ENST00000384418 136 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 MIR1263-201ENST00000408324 86 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 RNU6-772P-201ENST00000516042 105 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 RNU6-250P-201ENST00000516958 103 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 MIR3122-201ENST00000577243 73 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 MIR548AO-201ENST00000579992 96 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 MIR3618-201ENST00000580330 88 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 MIR4303-201ENST00000581299 66 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 AL137067.1-201ENST00000615933 120 ntBASIC1.35□□□□□ -2.19
HOXD3P31249 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
HOXD3P31249 SNORA25.3-201ENST00000363205 127 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 RNU6-647P-201ENST00000364243 107 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 RNU6-1067P-201ENST00000384752 107 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 SUMO2P12-201ENST00000405924 140 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 MIR1287-201ENST00000408492 90 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 AC090844.1-201ENST00000422019 156 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 AC027119.1-201ENST00000440877 241 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 AC008267.6-201ENST00000441664 139 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 SNORD111.1-201ENST00000516421 86 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 MIR3937-201ENST00000580135 106 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 MIR3683-201ENST00000580847 82 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 MIR502-201ENST00000606349 86 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 GHRLOS.1-201ENST00000610995 70 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 MIR7111-201ENST00000619751 72 ntBASIC1.34□□□□□ -2.19
HOXD3P31249 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.33□□□□□ -2.2
HOXD3P31249 MIR337-201ENST00000362281 93 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 Y_RNA.291-201ENST00000364886 113 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 SNORD58C-201ENST00000365223 64 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RNU1-78P-201ENST00000391248 165 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 SNORA26.6-201ENST00000391256 115 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RNU2-51P-201ENST00000410708 197 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RNU6-321P-201ENST00000410912 106 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RPS27P16-201ENST00000425758 201 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 AC009474.2-201ENST00000451383 136 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RNU6-970P-201ENST00000516312 107 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RNU6-313P-201ENST00000516317 112 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RNU6-479P-201ENST00000516348 105 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RNU2-35P-201ENST00000516446 142 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 RNU6-113P-201ENST00000516653 101 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 MIR4251-201ENST00000635819 61 ntBASIC1.33□□□□□ -2.2
HOXD3P31249 AL161722.3-201ENST00000605789 2983 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
HOXD3P31249 RNU7-73P-201ENST00000458743 63 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 RNA5SP445-201ENST00000515889 115 ntBASIC1.32□□□□□ -2.2
HOXD3P31249 RNU6-1258P-201ENST00000516911 111 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 185.7 ms