Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC091932.4-201ENST00000623386 200 ntBASIC1.62□□□□□ -2.15
HOXD9P28356 Y_RNA.366-201ENST00000365540 102 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 RNU6-203P-201ENST00000384038 104 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 RNY1P6-201ENST00000384193 109 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.61□□□□□ -2.15
HOXD9P28356 BTF3P4-201ENST00000418852 495 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 AC107297.1-201ENST00000459991 176 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 RPS29P24-201ENST00000486345 171 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 RNU6-919P-201ENST00000516731 104 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 RNU7-181P-201ENST00000517234 74 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 SNORD53B-201ENST00000577887 78 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.61□□□□□ -2.15
HOXD9P28356 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HOXD9P28356 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.6□□□□□ -2.15
HOXD9P28356 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.6□□□□□ -2.15
HOXD9P28356 MIR378A-201ENST00000362177 66 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 Y_RNA.370-201ENST00000365589 108 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 SNORA24-201ENST00000384096 131 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 RNU6-429P-201ENST00000384582 108 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 MIR934-201ENST00000401241 83 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 MIR1323-201ENST00000408090 73 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 AC004965.1-201ENST00000413033 213 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 RPL31P63-201ENST00000422565 375 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 snoU13.9-201ENST00000458927 103 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 RNU6-240P-201ENST00000516098 97 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 AC090821.2-201ENST00000523552 176 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 AL670379.3-201ENST00000605040 251 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 MTND5P18-201ENST00000445624 1801 ntBASIC1.6□□□□□ -2.15
HOXD9P28356 ICE2P2-201ENST00000483823 2787 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 RNU1-42P-201ENST00000364033 160 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 RNU6-60P-201ENST00000364792 103 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 AL035461.1-201ENST00000421490 332 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 JTBP1-201ENST00000441314 247 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 SNORD123-201ENST00000459473 70 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 AC005908.1-201ENST00000468701 347 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 SNORA31.4-201ENST00000516049 129 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 SNORD33.1-201ENST00000516213 88 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 MIR548AR-201ENST00000582191 57 ntBASIC1.59□□□□□ -2.15
HOXD9P28356 RNU6-690P-201ENST00000365242 106 ntBASIC1.58□□□□□ -2.16
HOXD9P28356 Y_RNA.528-201ENST00000384575 108 ntBASIC1.58□□□□□ -2.16
HOXD9P28356 MIR653-201ENST00000385279 96 ntBASIC1.58□□□□□ -2.16
HOXD9P28356 AP1B1P2-201ENST00000416196 106 ntBASIC1.58□□□□□ -2.16
HOXD9P28356 AL035398.1-201ENST00000430869 322 ntBASIC1.58□□□□□ -2.16
HOXD9P28356 COX6CP6-201ENST00000490840 228 ntBASIC1.58□□□□□ -2.16
HOXD9P28356 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.58□□□□□ -2.16
HOXD9P28356 RNU6-589P-201ENST00000516485 107 ntBASIC1.58□□□□□ -2.16
HOXD9P28356 SNORA74.3-201ENST00000517108 154 ntBASIC1.58□□□□□ -2.16
HOXD9P28356 AL596211.1-201ENST00000569873 2277 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
HOXD9P28356 MIR517C-201ENST00000385103 95 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 MIR548A3-201ENST00000385297 97 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 SNORA67.6-201ENST00000391093 99 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 MIR1263-201ENST00000408324 86 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 RNU7-95P-201ENST00000459222 64 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 RNU6-917P-201ENST00000516294 104 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 MIR4498-201ENST00000577599 66 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 SNORA77B-201ENST00000578179 125 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 MIR4285-201ENST00000581001 85 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 FAM106DP-201ENST00000586416 501 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 MIR6129-201ENST00000616087 109 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 AC095038.3-201ENST00000634439 195 ntBASIC1.57□□□□□ -2.16
HOXD9P28356 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
HOXD9P28356 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
HOXD9P28356 Y_RNA.198-201ENST00000364013 98 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 RNA5SP363-201ENST00000365072 115 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 Y_RNA.338-201ENST00000365320 114 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 SNORA70.7-201ENST00000384159 133 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 Y_RNA.537-201ENST00000384626 109 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 RNU6-1067P-201ENST00000384752 107 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 SNORD28B-201ENST00000390993 75 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 RNY4P18-201ENST00000391107 89 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 HSPE1P24-201ENST00000450782 238 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 RPS29P29-201ENST00000456396 171 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 Y_RNA.649-201ENST00000459077 103 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 Y_RNA.709-201ENST00000516952 92 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 SUMO2P16-201ENST00000519475 264 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 DNAJC19P9-201ENST00000555084 351 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.56□□□□□ -2.16
HOXD9P28356 MTND5P34-201ENST00000568888 325 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 MIR4305-201ENST00000583252 102 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 snoU13.31-201ENST00000607291 104 ntBASIC1.56□□□□□ -2.16
HOXD9P28356 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.56□□□□□ -2.16
HOXD9P28356 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.56□□□□□ -2.16
HOXD9P28356 Y_RNA.298-201ENST00000364960 107 ntBASIC1.55□□□□□ -2.16
HOXD9P28356 RNU6-44P-201ENST00000384045 107 ntBASIC1.55□□□□□ -2.16
HOXD9P28356 RNU2-11P-201ENST00000459191 187 ntBASIC1.55□□□□□ -2.16
HOXD9P28356 AC021443.1-201ENST00000604478 211 ntBASIC1.55□□□□□ -2.16
HOXD9P28356 AL512598.1-201ENST00000610158 273 ntBASIC1.55□□□□□ -2.16
HOXD9P28356 AL121890.5-201ENST00000620848 304 ntBASIC1.55□□□□□ -2.16
HOXD9P28356 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.55□□□□□ -2.16
HOXD9P28356 MIR302B-201ENST00000362188 73 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 MIR342-201ENST00000362212 99 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 SNORD116-21-201ENST00000384507 92 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 MIR570-201ENST00000384917 97 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 RNU6-1319P-201ENST00000390855 104 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 RNU6-747P-201ENST00000390928 104 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 RNU6-241P-201ENST00000391148 104 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 RNU6-177P-201ENST00000411257 104 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 SNX2P2-201ENST00000424553 323 ntBASIC1.54□□□□□ -2.16
HOXD9P28356 RNU7-73P-201ENST00000458743 63 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 193 ms