Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNX2P2-201ENST00000424553 323 ntBASIC2.18□□□□□ -2.06
COL6A1P12109 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.18□□□□□ -2.06
COL6A1P12109 RNU7-96P-201ENST00000459535 64 ntBASIC2.18□□□□□ -2.06
COL6A1P12109 AC107297.1-201ENST00000459991 176 ntBASIC2.18□□□□□ -2.06
COL6A1P12109 MIR5002-201ENST00000584713 97 ntBASIC2.18□□□□□ -2.06
COL6A1P12109 SNORD115-40-201ENST00000606510 82 ntBASIC2.18□□□□□ -2.06
COL6A1P12109 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
COL6A1P12109 MIR302B-201ENST00000362188 73 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 MIR342-201ENST00000362212 99 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 MIR450A1-201ENST00000362262 91 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 RNU6-1298P-201ENST00000362456 101 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 RNU6-414P-201ENST00000363705 104 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 SNORA1.2-201ENST00000365189 134 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 RNU4-52P-201ENST00000384209 138 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 Y_RNA.495-201ENST00000384435 112 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 MIR1302-5-201ENST00000408164 150 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 RNU7-34P-201ENST00000459394 64 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 AC104435.1-201ENST00000483483 166 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.17□□□□□ -2.06
COL6A1P12109 RPS29P24-201ENST00000486345 171 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 RNA5SP481-201ENST00000516814 122 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 SUMO2P16-201ENST00000519475 264 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 MIR3198-2-201ENST00000577868 80 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 MIR5089-201ENST00000580047 84 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 MIR4305-201ENST00000583252 102 ntBASIC2.17□□□□□ -2.06
COL6A1P12109 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL6A1P12109 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.16□□□□□ -2.06
COL6A1P12109 SNORA4.2-201ENST00000365313 147 ntBASIC2.16□□□□□ -2.06
COL6A1P12109 RNU6-106P-201ENST00000384405 107 ntBASIC2.16□□□□□ -2.06
COL6A1P12109 MIR30A-201ENST00000385092 71 ntBASIC2.16□□□□□ -2.06
COL6A1P12109 MIR1267-201ENST00000408723 78 ntBASIC2.16□□□□□ -2.06
COL6A1P12109 AC003989.2-201ENST00000440224 169 ntBASIC2.16□□□□□ -2.06
COL6A1P12109 AC090821.2-201ENST00000523552 176 ntBASIC2.16□□□□□ -2.06
COL6A1P12109 AC022254.1-201ENST00000567857 235 ntBASIC2.16□□□□□ -2.06
COL6A1P12109 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
COL6A1P12109 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
COL6A1P12109 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
COL6A1P12109 SNORA63.5-201ENST00000363548 123 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 Y_RNA.549-201ENST00000384657 102 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.15□□□□□ -2.07
COL6A1P12109 RNU6-998P-201ENST00000515894 101 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 RNU7-123P-201ENST00000515911 60 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 SNORA25.15-201ENST00000516487 89 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 Y_RNA.694-201ENST00000516677 117 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 SUB1P4-201ENST00000566062 339 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 MIR4709-201ENST00000577272 72 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 MIR4255-201ENST00000579351 72 ntBASIC2.15□□□□□ -2.07
COL6A1P12109 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL6A1P12109 Y_RNA.163-201ENST00000363702 113 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 SNORA70.7-201ENST00000384159 133 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 MIR9-3-201ENST00000385084 90 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 MIR136-201ENST00000385207 82 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
COL6A1P12109 RNU6-554P-201ENST00000410466 106 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 RNA5SP100-201ENST00000410903 110 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 RNA5SP59-201ENST00000410922 110 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 AC008834.1-201ENST00000511612 175 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.14□□□□□ -2.07
COL6A1P12109 MIR3163-201ENST00000581592 73 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 AL513423.1-201ENST00000621695 132 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 AC106754.2-201ENST00000623006 233 ntBASIC2.14□□□□□ -2.07
COL6A1P12109 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.14□□□□□ -2.07
COL6A1P12109 RNU4-16P-201ENST00000364737 141 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 Y_RNA.362-201ENST00000365518 110 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 RNU6-1113P-201ENST00000384348 107 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.13□□□□□ -2.07
COL6A1P12109 snoU13.27-201ENST00000459278 104 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 RNU6-250P-201ENST00000516958 103 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 RNU7-181P-201ENST00000517234 74 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 RNA5SP437-201ENST00000517249 129 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 RNU6-537P-201ENST00000517277 103 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 SNRPGP19-201ENST00000603826 189 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 AL035470.1-201ENST00000622571 220 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 AL442644.1-201ENST00000454390 3105 ntBASIC2.13□□□□□ -2.07
COL6A1P12109 RNU6-766P-201ENST00000362478 107 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 RNU6-1255P-201ENST00000363434 112 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 RNU6-112P-201ENST00000363599 104 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 Y_RNA.323-201ENST00000365157 109 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 RNU6-1014P-201ENST00000383940 103 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 RNU6-756P-201ENST00000383997 107 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 MIR516B2-201ENST00000385190 85 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 SNORA67.5-201ENST00000391036 107 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 RPL39P34-201ENST00000477141 156 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 Y_RNA.677-201ENST00000516401 85 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 SNORA31.17-201ENST00000516953 127 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.12□□□□□ -2.07
COL6A1P12109 RNU6-94P-201ENST00000607728 107 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 MIR8074-201ENST00000615081 81 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 AC084768.2-201ENST00000622736 221 ntBASIC2.12□□□□□ -2.07
COL6A1P12109 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
COL6A1P12109 SNORA51.5-201ENST00000384126 131 ntBASIC2.11□□□□□ -2.07
COL6A1P12109 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
COL6A1P12109 AL022718.1-201ENST00000412004 84 ntBASIC2.11□□□□□ -2.07
COL6A1P12109 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.11□□□□□ -2.07
COL6A1P12109 MIR4303-201ENST00000581299 66 ntBASIC2.11□□□□□ -2.07
COL6A1P12109 AC021506.2-201ENST00000612354 169 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms