Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RNU6-998P-201ENST00000515894 101 ntBASIC0.22□□□□□ -2.37
HLA-DQA1P01909 SNORA25.12-201ENST00000516202 82 ntBASIC0.22□□□□□ -2.37
HLA-DQA1P01909 RNA5SP134-201ENST00000516492 96 ntBASIC0.22□□□□□ -2.37
HLA-DQA1P01909 Y_RNA.711-201ENST00000516993 102 ntBASIC0.22□□□□□ -2.37
HLA-DQA1P01909 RNU6-1137P-201ENST00000517073 99 ntBASIC0.22□□□□□ -2.37
HLA-DQA1P01909 MIR5688-201ENST00000580619 83 ntBASIC0.22□□□□□ -2.37
HLA-DQA1P01909 SNORD92-201ENST00000585078 85 ntBASIC0.22□□□□□ -2.37
HLA-DQA1P01909 AC134503.1-201ENST00000633048 54 ntBASIC0.22□□□□□ -2.37
HLA-DQA1P01909 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.276-201ENST00000364732 109 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.634-201ENST00000364811 113 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 VTRNA1-3-201ENST00000365645 89 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 RNU6-484P-201ENST00000384016 107 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.440-201ENST00000384120 114 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 RNU6-1289P-201ENST00000384431 106 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 MIR216A-201ENST00000385063 110 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 MIR936-201ENST00000401264 98 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 MIR548I3-201ENST00000408378 149 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 MIR1257-201ENST00000408490 117 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.622-201ENST00000411091 108 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.21□□□□□ -2.38
HLA-DQA1P01909 RNU7-45P-201ENST00000459460 63 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 RNU6-1299P-201ENST00000516316 100 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 RNU6-1338P-201ENST00000516328 91 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 MIR4680-201ENST00000580906 66 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 AC022709.1-201ENST00000615967 87 ntBASIC0.21□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.152-201ENST00000363578 100 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.153-201ENST00000363615 91 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 RNU6-1189P-201ENST00000383958 107 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 SNORA1-201ENST00000384107 130 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 MIR518A1-201ENST00000385068 85 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 RNU2-70P-201ENST00000410718 179 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 RNU6-651P-201ENST00000411040 105 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 snoU13.18-201ENST00000459483 104 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 RNU7-96P-201ENST00000459535 64 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 AC108740.1-201ENST00000498629 225 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 RNA5SP436-201ENST00000516020 115 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 RNU6-453P-201ENST00000516819 85 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 RNA5SP94-201ENST00000516917 108 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 MIR4711-201ENST00000578274 70 ntBASIC0.2□□□□□ -2.38
HLA-DQA1P01909 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.2□□□□□ -2.38
HLA-DQA1P01909 AC090625.1-201ENST00000357130 210 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.304-201ENST00000365011 112 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 RNU6-597P-201ENST00000365620 102 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.410-201ENST00000383992 113 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.460-201ENST00000384255 102 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 RNU6-1228P-201ENST00000391014 107 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 SNORA26.6-201ENST00000391256 115 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 RNU6-1203P-201ENST00000410703 110 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 RNU6-126P-201ENST00000516685 103 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 RNU6-570P-201ENST00000517051 105 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 MIR3678-201ENST00000578455 94 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 MIR3171-201ENST00000584270 74 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 SNORA25.18-201ENST00000607153 114 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 AP001282.2-201ENST00000616149 309 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 MIR6717-201ENST00000622747 73 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 MIR376A2-201ENST00000636782 80 ntBASIC0.19□□□□□ -2.38
HLA-DQA1P01909 snoU2_19.4-201ENST00000364329 80 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.275-201ENST00000364726 110 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 RNU6-740P-201ENST00000364734 105 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.351-201ENST00000365436 96 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 MIR548P-201ENST00000408336 84 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 SNORA40.8-201ENST00000411034 126 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 RNU2-55P-201ENST00000411146 174 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 MTND4LP11-201ENST00000422184 280 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 SNRPGP12-201ENST00000449481 213 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.18□□□□□ -2.38
HLA-DQA1P01909 RNU6-1143P-201ENST00000516125 104 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 RNU6-448P-201ENST00000517052 107 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 AC020661.2-201ENST00000560114 134 ntBASIC0.18□□□□□ -2.38
HLA-DQA1P01909 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.18□□□□□ -2.38
HLA-DQA1P01909 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.18□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.23-201ENST00000362496 106 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.118-201ENST00000363300 101 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 SNORD114-23-201ENST00000363536 72 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 RNA5SP117-201ENST00000365294 118 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.354-201ENST00000365448 111 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.432-201ENST00000384087 111 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.535-201ENST00000384612 99 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 MIR598-201ENST00000384868 97 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 MT-TF-201ENST00000387314 71 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 SNORD93-201ENST00000408813 74 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.17□□□□□ -2.38
HLA-DQA1P01909 RNA5SP153-201ENST00000516498 76 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 AC022523.2-201ENST00000561045 150 ntBASIC0.17□□□□□ -2.38
HLA-DQA1P01909 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.17□□□□□ -2.38
HLA-DQA1P01909 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.17□□□□□ -2.38
HLA-DQA1P01909 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.17□□□□□ -2.38
HLA-DQA1P01909 MIR302B-201ENST00000362188 73 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 SNORD118-201ENST00000363593 134 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 RNU6-1327P-201ENST00000365302 105 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 SNORA26-201ENST00000391286 122 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 AL606845.1-201ENST00000404881 255 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.617-201ENST00000410920 90 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.16□□□□□ -2.38
HLA-DQA1P01909 RNU6-561P-201ENST00000516222 102 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 AC133485.4-201ENST00000561835 220 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms