Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SNORD115-1-201ENST00000364961 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-26-201ENST00000365067 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-10-201ENST00000365073 81 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 Y_RNA.327-201ENST00000365201 102 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-43-201ENST00000365503 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-36-201ENST00000365629 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD18B-201ENST00000365659 72 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 MIR136-201ENST00000385207 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 MIR1323-201ENST00000408090 73 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.36□□□□□ -2.19
LMX1BO60663 AC245517.4-201ENST00000448601 281 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD123-201ENST00000459473 70 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 RNU6-772P-201ENST00000516042 105 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 AC015688.6-201ENST00000577737 104 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 MIR4713-201ENST00000582691 75 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 HSPE1P19-201ENST00000603327 295 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-40-201ENST00000606510 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.36□□□□□ -2.19
LMX1BO60663 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
LMX1BO60663 RNU1-42P-201ENST00000364033 160 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 SNORD58C-201ENST00000365223 64 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 SNORA27-201ENST00000384323 126 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 MIR320A-201ENST00000385302 82 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 MTATP6P21-201ENST00000440681 189 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 RN7SKP19-201ENST00000516016 252 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 SNORA18.7-201ENST00000516910 131 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 SNORA74.3-201ENST00000517108 154 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 AC090049.2-201ENST00000550377 109 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.35□□□□□ -2.19
LMX1BO60663 MIR548AI-201ENST00000579940 88 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 FAM106DP-201ENST00000586416 501 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 AC106754.2-201ENST00000623006 233 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 AC091932.4-201ENST00000623386 200 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 MIR3914-2-201ENST00000637339 95 ntBASIC1.35□□□□□ -2.19
LMX1BO60663 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
LMX1BO60663 MIR302D-201ENST00000362275 68 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 Y_RNA.224-201ENST00000364308 111 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 Y_RNA.241-201ENST00000364470 117 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 RNU6-60P-201ENST00000364792 103 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 Y_RNA.351-201ENST00000365436 96 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 Y_RNA.353-201ENST00000365440 108 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 Y_RNA.366-201ENST00000365540 102 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 SNORA24-201ENST00000384096 131 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 SNORA67.6-201ENST00000391093 99 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.34□□□□□ -2.19
LMX1BO60663 MIR1267-201ENST00000408723 78 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 RNU6-998P-201ENST00000515894 101 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 RNU6-113P-201ENST00000516653 101 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 AC090821.2-201ENST00000523552 176 ntBASIC1.34□□□□□ -2.19
LMX1BO60663 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.33□□□□□ -2.2
LMX1BO60663 RNU6-647P-201ENST00000364243 107 ntBASIC1.33□□□□□ -2.2
LMX1BO60663 RNU6-997P-201ENST00000384725 107 ntBASIC1.33□□□□□ -2.2
LMX1BO60663 MIR570-201ENST00000384917 97 ntBASIC1.33□□□□□ -2.2
LMX1BO60663 SNORD41-201ENST00000386967 70 ntBASIC1.33□□□□□ -2.2
LMX1BO60663 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
LMX1BO60663 RPS29P24-201ENST00000486345 171 ntBASIC1.33□□□□□ -2.2
LMX1BO60663 RNU5E-3P-201ENST00000515913 68 ntBASIC1.33□□□□□ -2.2
LMX1BO60663 RNU1-92P-201ENST00000517017 135 ntBASIC1.33□□□□□ -2.2
LMX1BO60663 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.33□□□□□ -2.2
LMX1BO60663 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.33□□□□□ -2.2
LMX1BO60663 AL645939.4-201ENST00000604495 135 ntBASIC1.33□□□□□ -2.2
LMX1BO60663 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
LMX1BO60663 SNORA7.1-201ENST00000363750 139 ntBASIC1.32□□□□□ -2.2
LMX1BO60663 Y_RNA.370-201ENST00000365589 108 ntBASIC1.32□□□□□ -2.2
LMX1BO60663 MIR513A1-201ENST00000385138 129 ntBASIC1.32□□□□□ -2.2
LMX1BO60663 MIR1304-201ENST00000408243 91 ntBASIC1.32□□□□□ -2.2
LMX1BO60663 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.32□□□□□ -2.2
LMX1BO60663 AC005908.1-201ENST00000468701 347 ntBASIC1.32□□□□□ -2.2
LMX1BO60663 AC023790.1-201ENST00000482174 347 ntBASIC1.32□□□□□ -2.2
LMX1BO60663 RNA5SP445-201ENST00000515889 115 ntBASIC1.32□□□□□ -2.2
LMX1BO60663 RNU6-240P-201ENST00000516098 97 ntBASIC1.32□□□□□ -2.2
LMX1BO60663 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.32□□□□□ -2.2
LMX1BO60663 ZNF209P-201ENST00000593450 2304 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 RNU6-414P-201ENST00000363705 104 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 RNU6-392P-201ENST00000364926 101 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 MIR517C-201ENST00000385103 95 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 MT-TI-201ENST00000387365 69 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 RNU6-913P-201ENST00000390913 95 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 SNORA26.6-201ENST00000391256 115 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 snoU13.25-201ENST00000458945 104 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 snoU13.18-201ENST00000459483 104 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 RNU7-96P-201ENST00000459535 64 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 RN7SKP179-201ENST00000516126 217 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 MIR4791-201ENST00000607666 84 ntBASIC1.31□□□□□ -2.2
LMX1BO60663 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.31□□□□□ -2.2
LMX1BO60663 AL596211.1-201ENST00000569873 2277 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 RNU1-133P-201ENST00000364867 167 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 RNY1P6-201ENST00000384193 109 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 RNU6-429P-201ENST00000384582 108 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 RNU6-1190P-201ENST00000410811 104 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 Y_RNA.629-201ENST00000411368 105 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 RNU2-11P-201ENST00000459191 187 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 RNU7-45P-201ENST00000459460 63 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 RNU7-80P-201ENST00000459562 61 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 AC008834.1-201ENST00000511612 175 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 RNA5SP61-201ENST00000516453 100 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 MIR6504-201ENST00000613520 61 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms