Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU7-25P-201ENST00000516544 62 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 MIR4255-201ENST00000579351 72 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 MIR4744-201ENST00000581563 82 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 Y_RNA.778-201ENST00000620203 90 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 AL442644.1-201ENST00000454390 3105 ntBASIC2.25□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-151P-201ENST00000364158 107 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-60P-201ENST00000364792 103 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 SNORD114-22-201ENST00000365423 72 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-1168P-201ENST00000390831 104 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-239P-201ENST00000390990 99 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 U8.17-201ENST00000391292 132 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 RNU1-98P-201ENST00000458992 160 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 Y_RNA.797-201ENST00000515977 94 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 RNA5SP153-201ENST00000516498 76 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-504P-201ENST00000516568 104 ntBASIC2.24□□□□□ -2.05
CCDC9Q9Y3X0 SNORD45.3-201ENST00000363836 72 ntBASIC2.23□□□□□ -2.05
CCDC9Q9Y3X0 SNORA1.2-201ENST00000365189 134 ntBASIC2.23□□□□□ -2.05
CCDC9Q9Y3X0 SNORA22C-201ENST00000384614 134 ntBASIC2.23□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-426P-201ENST00000516464 97 ntBASIC2.23□□□□□ -2.05
CCDC9Q9Y3X0 MIR4764-201ENST00000580680 88 ntBASIC2.23□□□□□ -2.05
CCDC9Q9Y3X0 SNORD24-201ENST00000383884 75 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-484P-201ENST00000384016 107 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 Y_RNA.547-201ENST00000384654 119 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-1067P-201ENST00000384752 107 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 MIR569-201ENST00000385228 96 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 SNRPGP8-201ENST00000454064 226 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 RNU6-693P-201ENST00000516134 107 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 RNU7-121P-201ENST00000516604 62 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 MIR548X2-201ENST00000579776 100 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 MIR4431-201ENST00000579990 94 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 AL365222.1-201ENST00000614661 98 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 MIR6779-201ENST00000617283 64 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 AP000648.3-201ENST00000623539 4507 ntBASIC2.22□□□□□ -2.05
CCDC9Q9Y3X0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC9Q9Y3X0 RNU6-578P-201ENST00000390980 103 ntBASIC2.21□□□□□ -2.06
CCDC9Q9Y3X0 SNORA67.6-201ENST00000391093 99 ntBASIC2.21□□□□□ -2.06
CCDC9Q9Y3X0 RNU6-257P-201ENST00000410238 98 ntBASIC2.21□□□□□ -2.06
CCDC9Q9Y3X0 Y_RNA.629-201ENST00000411368 105 ntBASIC2.21□□□□□ -2.06
CCDC9Q9Y3X0 AC008267.6-201ENST00000441664 139 ntBASIC2.21□□□□□ -2.06
CCDC9Q9Y3X0 AL121914.1-201ENST00000450188 156 ntBASIC2.21□□□□□ -2.06
CCDC9Q9Y3X0 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC9Q9Y3X0 Y_RNA.634-201ENST00000364811 113 ntBASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 RNU6-818P-201ENST00000364837 108 ntBASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 AC107027.2-201ENST00000512197 115 ntBASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 RNU6-1270P-201ENST00000517128 108 ntBASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 RNU7-181P-201ENST00000517234 74 ntBASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 MIR4419B-201ENST00000577260 68 ntBASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 AL096861.1-201ENST00000610899 123 ntBASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 AC010332.2-201ENST00000613083 1904 ntBASIC2.2□□□□□ -2.06
CCDC9Q9Y3X0 SNORA40-201ENST00000388090 126 ntBASIC2.19□□□□□ -2.06
CCDC9Q9Y3X0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC9Q9Y3X0 RNU4-57P-201ENST00000515980 135 ntBASIC2.19□□□□□ -2.06
CCDC9Q9Y3X0 AC109810.1-201ENST00000534066 224 ntBASIC2.19□□□□□ -2.06
CCDC9Q9Y3X0 MIR4421-201ENST00000578133 69 ntBASIC2.19□□□□□ -2.06
CCDC9Q9Y3X0 DNAJC19P2-201ENST00000593340 302 ntBASIC2.19□□□□□ -2.06
CCDC9Q9Y3X0 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC9Q9Y3X0 AL161722.3-201ENST00000605789 2983 ntBASIC2.19□□□□□ -2.06
CCDC9Q9Y3X0 Y_RNA.91-201ENST00000363042 107 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 SNORD115-28-201ENST00000363931 81 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 RNU4-11P-201ENST00000365287 132 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 MIR513C-201ENST00000401352 84 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 SNORA31.4-201ENST00000516049 129 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 RNA5SP272-201ENST00000516095 111 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 RNU6-197P-201ENST00000516680 100 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 MIR548AR-201ENST00000582191 57 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 ZNF209P-201ENST00000593450 2304 ntBASIC2.18□□□□□ -2.06
CCDC9Q9Y3X0 RNA5SP48-201ENST00000363969 126 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 RNA5SP205-201ENST00000364653 136 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 SNORD61-201ENST00000384252 73 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 RNU6-997P-201ENST00000384725 107 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 RPS29P23-201ENST00000458635 123 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 AC107297.1-201ENST00000459991 176 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 RN7SL274P-201ENST00000492268 272 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 SNORA31.2-201ENST00000516019 134 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 AL160236.1-201ENST00000556317 195 ntBASIC2.17□□□□□ -2.06
CCDC9Q9Y3X0 RNU6-888P-201ENST00000363010 101 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 SNORD114-26-201ENST00000363543 72 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 Y_RNA.337-201ENST00000365312 102 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 Y_RNA.370-201ENST00000365589 108 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 MTND4LP9-201ENST00000427694 174 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 SNORA25.12-201ENST00000516202 82 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 RNU6-561P-201ENST00000516222 102 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 AC097639.2-201ENST00000603159 172 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 MIR6515-201ENST00000619843 57 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 AC008133.2-201ENST00000624540 351 ntBASIC2.16□□□□□ -2.06
CCDC9Q9Y3X0 Y_RNA.127-201ENST00000363386 109 ntBASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.273-201ENST00000364703 102 ntBASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 MIR539-201ENST00000365690 78 ntBASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 SNORD26-201ENST00000384147 75 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 187.4 ms