Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 MIR21-201ENST00000362134 72 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-661P-201ENST00000362409 107 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 SNORD115-19-201ENST00000363098 82 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 Y_RNA.107-201ENST00000363190 121 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 SNORD115-18-201ENST00000363293 82 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 SNORD115-17-201ENST00000364612 82 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 Y_RNA.370-201ENST00000365589 108 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 Y_RNA.470-201ENST00000384307 117 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 RNA5SP501-201ENST00000410990 112 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 RPS12P2-201ENST00000439728 269 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 MIR1270-201ENST00000459320 83 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 RNU1-41P-201ENST00000516161 162 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 RNU1-48P-201ENST00000516400 162 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 AC245884.12-201ENST00000615364 59 ntBASIC2.88□□□□□ -1.95
CHMP3Q9Y3E7 AC016717.2-201ENST00000609089 5141 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-1099P-201ENST00000363533 107 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 RNU1-138P-201ENST00000384093 164 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-296P-201ENST00000384608 107 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-950P-201ENST00000384651 107 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 MIR605-201ENST00000385078 83 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 SNORA48.1-201ENST00000390879 135 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 HMGN2P39-201ENST00000398005 273 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 RN7SKP223-201ENST00000410582 62 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 RNU2-7P-201ENST00000410794 178 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 RNU7-113P-201ENST00000459273 62 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 AC107297.1-201ENST00000459991 176 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 AC099513.1-201ENST00000490423 301 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 SUB1P4-201ENST00000566062 339 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 AL137847.3-201ENST00000611521 109 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CHMP3Q9Y3E7 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 Y_RNA.93-201ENST00000363066 109 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-112P-201ENST00000363599 104 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 Y_RNA.155-201ENST00000363632 101 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 Y_RNA.507-201ENST00000384500 99 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 MIR520A-201ENST00000384862 85 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 MIR452-201ENST00000385020 85 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 MIR577-201ENST00000385196 96 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 MIR136-201ENST00000385207 82 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 RNA5SP465-201ENST00000391195 109 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 AL353813.1-201ENST00000440700 253 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 RNU7-67P-201ENST00000459003 62 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 SCARNA23-201ENST00000516060 130 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 MIR548AR-201ENST00000582191 57 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 SNORD14A-201ENST00000606526 91 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 MIR4791-201ENST00000607666 84 ntBASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CHMP3Q9Y3E7 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 MIR6073-201ENST00000352083 89 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 RNU4-36P-201ENST00000364294 144 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 RNU4-67P-201ENST00000364569 141 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 Y_RNA.360-201ENST00000365512 102 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-1319P-201ENST00000390855 104 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-913P-201ENST00000390913 95 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-747P-201ENST00000390928 104 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-241P-201ENST00000391148 104 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 SNORA26.6-201ENST00000391256 115 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-177P-201ENST00000411257 104 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 MIR548AE2-201ENST00000583456 67 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 MIR548Z-201ENST00000584743 97 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 AL049779.4-201ENST00000604500 156 ntBASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CHMP3Q9Y3E7 SNORA22.1-201ENST00000362701 134 ntBASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-363P-201ENST00000362895 105 ntBASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 Y_RNA.466-201ENST00000384294 113 ntBASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 MIR221-201ENST00000385135 110 ntBASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 AL356320.1-201ENST00000429616 163 ntBASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 RNU6-795P-201ENST00000516323 103 ntBASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 MIR2052-201ENST00000636055 55 ntBASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 MIR6841-201ENST00000637129 72 ntBASIC2.84□□□□□ -1.95
CHMP3Q9Y3E7 SNORA3A-201ENST00000364113 130 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 SNORA1.2-201ENST00000365189 134 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 RNU6-616P-201ENST00000384353 107 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 RNU4-69P-201ENST00000410677 143 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 RNU6-733P-201ENST00000410759 104 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 PGBD4P5-201ENST00000445958 426 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 RPS29P29-201ENST00000456396 171 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 SNORD123-201ENST00000459473 70 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 RNU2-13P-201ENST00000515909 113 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 RNA5SP33-201ENST00000516687 98 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 MIR4709-201ENST00000577272 72 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 MIR5007-201ENST00000583098 95 ntBASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
CHMP3Q9Y3E7 RNU6-409P-201ENST00000384114 104 ntBASIC2.82□□□□□ -1.96
CHMP3Q9Y3E7 MIR524-201ENST00000385242 87 ntBASIC2.82□□□□□ -1.96
CHMP3Q9Y3E7 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CHMP3Q9Y3E7 SNORA7.5-201ENST00000410672 110 ntBASIC2.82□□□□□ -1.96
CHMP3Q9Y3E7 AC011753.1-201ENST00000451001 220 ntBASIC2.82□□□□□ -1.96
CHMP3Q9Y3E7 RNU7-61P-201ENST00000515897 61 ntBASIC2.82□□□□□ -1.96
CHMP3Q9Y3E7 MIR4694-201ENST00000578534 80 ntBASIC2.82□□□□□ -1.96
CHMP3Q9Y3E7 AC012531.4-201ENST00000616509 177 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 320.4 ms