Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CDK11AQ9UQ88 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.08
CDK11AQ9UQ88 Y_RNA.393-201ENST00000383936 102 ntBASIC2.03□□□□□ -2.08
CDK11AQ9UQ88 AC007751.1-201ENST00000529260 376 ntBASIC2.03□□□□□ -2.08
CDK11AQ9UQ88 MIR8065-201ENST00000620577 100 ntBASIC2.03□□□□□ -2.08
CDK11AQ9UQ88 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.03□□□□□ -2.08
CDK11AQ9UQ88 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 Y_RNA.37-201ENST00000362606 108 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 SNORA25.8-201ENST00000364831 128 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 RNU6-1292P-201ENST00000383856 107 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 RNU6-209P-201ENST00000384118 107 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 PCNPP3-201ENST00000393579 471 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 RPL39P39-201ENST00000455840 151 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 RNU4ATAC11P-201ENST00000515939 126 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 RNU7-121P-201ENST00000516604 62 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 RN7SKP88-201ENST00000516847 250 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 MIR3646-201ENST00000578301 84 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 7SK.8-201ENST00000612110 250 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 7SK.11-201ENST00000615477 250 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 7SK.13-201ENST00000622040 250 ntBASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CDK11AQ9UQ88 Y_RNA.370-201ENST00000365589 108 ntBASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 Y_RNA.464-201ENST00000384282 110 ntBASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 MIR520C-201ENST00000385005 87 ntBASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 SNORD41-201ENST00000386967 70 ntBASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 SNORA18.4-201ENST00000516440 124 ntBASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 MIR3129-201ENST00000581095 76 ntBASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 DNAJC19P2-201ENST00000593340 302 ntBASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.01□□□□□ -2.09
CDK11AQ9UQ88 RNU6-1189P-201ENST00000383958 107 ntBASIC2□□□□□ -2.09
CDK11AQ9UQ88 RNA5SP127-201ENST00000411051 133 ntBASIC2□□□□□ -2.09
CDK11AQ9UQ88 AF228730.3-201ENST00000436691 102 ntBASIC2□□□□□ -2.09
CDK11AQ9UQ88 RNU7-181P-201ENST00000517234 74 ntBASIC2□□□□□ -2.09
CDK11AQ9UQ88 AP003484.1-201ENST00000530974 250 ntBASIC2□□□□□ -2.09
CDK11AQ9UQ88 MIR3664-201ENST00000579074 99 ntBASIC2□□□□□ -2.09
CDK11AQ9UQ88 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2□□□□□ -2.09
CDK11AQ9UQ88 MIR6844-201ENST00000637122 62 ntBASIC2□□□□□ -2.09
CDK11AQ9UQ88 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 MIR96-201ENST00000362288 78 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-34-201ENST00000362441 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-12-201ENST00000362583 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-29-201ENST00000362834 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-9-201ENST00000362912 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-21-201ENST00000362963 81 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-14-201ENST00000363090 81 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-13-201ENST00000363358 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-41-201ENST00000363608 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-11-201ENST00000363616 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-5-201ENST00000363633 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-39-201ENST00000363694 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-4-201ENST00000363810 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-16-201ENST00000363887 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-6-201ENST00000363942 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-42-201ENST00000364273 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 Y_RNA.241-201ENST00000364470 117 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-15-201ENST00000364809 81 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-1-201ENST00000364961 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-26-201ENST00000365067 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-10-201ENST00000365073 81 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-43-201ENST00000365503 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-36-201ENST00000365629 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORA1-201ENST00000384107 130 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORA40.5-201ENST00000391061 128 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 RNU6-394P-201ENST00000410735 107 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD111.1-201ENST00000516421 86 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 MIR4764-201ENST00000580680 88 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 SNORD115-40-201ENST00000606510 82 ntBASIC1.99□□□□□ -2.09
CDK11AQ9UQ88 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 RNU6-449P-201ENST00000383914 107 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 RNU6-768P-201ENST00000384683 107 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 Y_RNA.580-201ENST00000391004 95 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 SNORD37.2-201ENST00000391075 66 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 SNORA75.5-201ENST00000391291 81 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 MIR548I3-201ENST00000408378 149 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 MIR548I1-201ENST00000408810 149 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 MIR548AR-201ENST00000582191 57 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 AC104465.1-201ENST00000611365 139 ntBASIC1.98□□□□□ -2.09
CDK11AQ9UQ88 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.97□□□□□ -2.09
CDK11AQ9UQ88 RNU1-93P-201ENST00000364704 169 ntBASIC1.97□□□□□ -2.09
CDK11AQ9UQ88 SNORA70.7-201ENST00000384159 133 ntBASIC1.97□□□□□ -2.09
CDK11AQ9UQ88 MIR624-201ENST00000385217 97 ntBASIC1.97□□□□□ -2.09
CDK11AQ9UQ88 SNORD77.3-201ENST00000391113 65 ntBASIC1.97□□□□□ -2.09
CDK11AQ9UQ88 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.97□□□□□ -2.09
CDK11AQ9UQ88 MIR7974-201ENST00000615835 79 ntBASIC1.97□□□□□ -2.09
CDK11AQ9UQ88 MTND1P7-201ENST00000632801 297 ntBASIC1.97□□□□□ -2.09
CDK11AQ9UQ88 RNU6-42P-201ENST00000384165 107 ntBASIC1.96□□□□□ -2.1
CDK11AQ9UQ88 MT-TR-201ENST00000387439 65 ntBASIC1.96□□□□□ -2.1
CDK11AQ9UQ88 RNA5SP220-201ENST00000516298 104 ntBASIC1.96□□□□□ -2.1
CDK11AQ9UQ88 MIR3144-201ENST00000579460 79 ntBASIC1.96□□□□□ -2.1
CDK11AQ9UQ88 RMST_2.1-201ENST00000617263 136 ntBASIC1.96□□□□□ -2.1
CDK11AQ9UQ88 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CDK11AQ9UQ88 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.96□□□□□ -2.1
CDK11AQ9UQ88 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
CDK11AQ9UQ88 Y_RNA.537-201ENST00000384626 109 ntBASIC1.95□□□□□ -2.1
CDK11AQ9UQ88 MIR758-201ENST00000390227 88 ntBASIC1.95□□□□□ -2.1
CDK11AQ9UQ88 RNU6-947P-201ENST00000516264 106 ntBASIC1.95□□□□□ -2.1
CDK11AQ9UQ88 RNU7-40P-201ENST00000516397 64 ntBASIC1.95□□□□□ -2.1
CDK11AQ9UQ88 SNORA27-201ENST00000384323 126 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms