Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC104332.2-201ENST00000429959 156 ntBASIC3.13□□□□□ -1.91
COL17A1Q9UMD9 HSPE1P19-201ENST00000603327 295 ntBASIC3.13□□□□□ -1.91
COL17A1Q9UMD9 AL356280.1-201ENST00000603614 379 ntBASIC3.13□□□□□ -1.91
COL17A1Q9UMD9 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL17A1Q9UMD9 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL17A1Q9UMD9 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 SNORD115-27-201ENST00000364430 82 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 U8.15-201ENST00000390947 134 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 RNU6-679P-201ENST00000391003 106 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 FO393413.1-201ENST00000402892 195 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 MIR1253-201ENST00000408273 105 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 SNORA7.5-201ENST00000410672 110 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 RNU2-63P-201ENST00000410792 194 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 AL161788.1-201ENST00000441805 169 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 HMGN2P18-201ENST00000450680 270 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 DNAJC19P9-201ENST00000555084 351 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 RMST_2.1-201ENST00000617263 136 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 MIR6779-201ENST00000617283 64 ntBASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL17A1Q9UMD9 Y_RNA.609-201ENST00000410669 89 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 AL035398.1-201ENST00000430869 322 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 RNU6-965P-201ENST00000516721 96 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 RNU7-70P-201ENST00000516941 66 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 IGLV3-17-201ENST00000519099 244 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 BX248123.2-201ENST00000606318 124 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 MIR6132-201ENST00000622083 109 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 Y_RNA.788-201ENST00000622394 112 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 AC005336.3-201ENST00000623833 2679 ntBASIC3.11□□□□□ -1.91
COL17A1Q9UMD9 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL17A1Q9UMD9 U8.9-201ENST00000365667 134 ntBASIC3.1□□□□□ -1.91
COL17A1Q9UMD9 AL627390.1-201ENST00000396055 340 ntBASIC3.1□□□□□ -1.91
COL17A1Q9UMD9 RNU6ATAC38P-201ENST00000408119 126 ntBASIC3.1□□□□□ -1.91
COL17A1Q9UMD9 SNRPGP13-201ENST00000442212 177 ntBASIC3.1□□□□□ -1.91
COL17A1Q9UMD9 MIR6504-201ENST00000613520 61 ntBASIC3.1□□□□□ -1.91
COL17A1Q9UMD9 AC008163.1-202ENST00000636004 2889 ntBASIC3.1□□□□□ -1.91
COL17A1Q9UMD9 RNU1-96P-201ENST00000364163 162 ntBASIC3.09□□□□□ -1.91
COL17A1Q9UMD9 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.09□□□□□ -1.91
COL17A1Q9UMD9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL17A1Q9UMD9 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.91
COL17A1Q9UMD9 SNORD115-19-201ENST00000363098 82 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 SNORD115-18-201ENST00000363293 82 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 RNU6-743P-201ENST00000364151 106 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 SNORD115-17-201ENST00000364612 82 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 MIR9-3-201ENST00000385084 90 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 MIR4438-201ENST00000585271 93 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 AC022217.4-201ENST00000604389 163 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.09□□□□□ -1.92
COL17A1Q9UMD9 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 RNU6-1189P-201ENST00000383958 107 ntBASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 Y_RNA.430-201ENST00000384081 110 ntBASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 SNORA26.7-201ENST00000391288 122 ntBASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 RNU7-95P-201ENST00000459222 64 ntBASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 RPS29P12-201ENST00000460178 152 ntBASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 AC095038.3-201ENST00000634439 195 ntBASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 AC018630.2-201ENST00000534866 2403 ntBASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
COL17A1Q9UMD9 RNU4-16P-201ENST00000364737 141 ntBASIC3.07□□□□□ -1.92
COL17A1Q9UMD9 RNU6-1201P-201ENST00000384227 107 ntBASIC3.07□□□□□ -1.92
COL17A1Q9UMD9 SNORA48.3-201ENST00000391081 134 ntBASIC3.07□□□□□ -1.92
COL17A1Q9UMD9 Y_RNA.621-201ENST00000411065 96 ntBASIC3.07□□□□□ -1.92
COL17A1Q9UMD9 AC123900.1-201ENST00000420390 96 ntBASIC3.07□□□□□ -1.92
COL17A1Q9UMD9 AC023141.11-201ENST00000508864 202 ntBASIC3.07□□□□□ -1.92
COL17A1Q9UMD9 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL17A1Q9UMD9 SNORA68.1-201ENST00000364537 132 ntBASIC3.06□□□□□ -1.92
COL17A1Q9UMD9 RNU6-392P-201ENST00000364926 101 ntBASIC3.06□□□□□ -1.92
COL17A1Q9UMD9 Y_RNA.377-201ENST00000365644 108 ntBASIC3.06□□□□□ -1.92
COL17A1Q9UMD9 AC093729.1-201ENST00000513074 128 ntBASIC3.06□□□□□ -1.92
COL17A1Q9UMD9 AC103810.7-201ENST00000607821 91 ntBASIC3.06□□□□□ -1.92
COL17A1Q9UMD9 MIR1248-201ENST00000629190 106 ntBASIC3.06□□□□□ -1.92
COL17A1Q9UMD9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 Y_RNA.410-201ENST00000383992 113 ntBASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 MIR561-201ENST00000385216 97 ntBASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 AL512326.2-201ENST00000426359 151 ntBASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 SNORA48.11-201ENST00000517015 89 ntBASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC3.05□□□□□ -1.92
COL17A1Q9UMD9 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 RNU1-22P-201ENST00000363334 158 ntBASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 RPS23P4-201ENST00000487908 423 ntBASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 RPS29P11-201ENST00000496507 171 ntBASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 SNRPGP19-201ENST00000603826 189 ntBASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 AL355297.2-201ENST00000604792 129 ntBASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL17A1Q9UMD9 MIR520G-201ENST00000385064 90 ntBASIC3.03□□□□□ -1.92
COL17A1Q9UMD9 MIR95-201ENST00000385072 81 ntBASIC3.03□□□□□ -1.92
COL17A1Q9UMD9 AC019129.1-201ENST00000403786 261 ntBASIC3.03□□□□□ -1.92
COL17A1Q9UMD9 RNA5SP402-201ENST00000517148 110 ntBASIC3.03□□□□□ -1.92
COL17A1Q9UMD9 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
COL17A1Q9UMD9 RNU6-86P-201ENST00000606534 107 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms