Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 MIR3198-2-201ENST00000577868 80 ntBASIC2.58□□□□□ -2
BRPF3Q9ULD4 AC106754.2-201ENST00000623006 233 ntBASIC2.58□□□□□ -2
BRPF3Q9ULD4 AC021613.1-201ENST00000623880 111 ntBASIC2.58□□□□□ -2
BRPF3Q9ULD4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
BRPF3Q9ULD4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
BRPF3Q9ULD4 MIR194-1-201ENST00000384892 85 ntBASIC2.57□□□□□ -2
BRPF3Q9ULD4 MIR759-201ENST00000390224 91 ntBASIC2.57□□□□□ -2
BRPF3Q9ULD4 RNU2-35P-201ENST00000516446 142 ntBASIC2.57□□□□□ -2
BRPF3Q9ULD4 AC022254.1-201ENST00000567857 235 ntBASIC2.57□□□□□ -2
BRPF3Q9ULD4 MIR3935-201ENST00000583472 104 ntBASIC2.57□□□□□ -2
BRPF3Q9ULD4 AC092881.1-201ENST00000638218 2733 ntBASIC2.56□□□□□ -2
BRPF3Q9ULD4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.56□□□□□ -2
BRPF3Q9ULD4 AC004965.1-201ENST00000413033 213 ntBASIC2.56□□□□□ -2
BRPF3Q9ULD4 RNU6-412P-201ENST00000516434 106 ntBASIC2.56□□□□□ -2
BRPF3Q9ULD4 RNU7-53P-201ENST00000516705 60 ntBASIC2.56□□□□□ -2
BRPF3Q9ULD4 SNORA74.3-201ENST00000517108 154 ntBASIC2.56□□□□□ -2
BRPF3Q9ULD4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.56□□□□□ -2
BRPF3Q9ULD4 Y_RNA.281-201ENST00000364774 94 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 SNORA24-201ENST00000384096 131 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 SNORA3.2-201ENST00000408221 125 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 RNA5SP144-201ENST00000410846 116 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 RNU7-45P-201ENST00000459460 63 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 RNU6-917P-201ENST00000516294 104 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 DEFB122-202ENST00000569013 197 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 AC243994.1-201ENST00000618627 109 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 AC095038.3-201ENST00000634439 195 ntBASIC2.55□□□□□ -2
BRPF3Q9ULD4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.54□□□□□ -2
BRPF3Q9ULD4 RNU6-661P-201ENST00000362409 107 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 RNY4P6-201ENST00000363667 96 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 RNU6-414P-201ENST00000363705 104 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 Y_RNA.549-201ENST00000384657 102 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 RNU6-1104P-201ENST00000384723 104 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 SNORD12C-201ENST00000386307 89 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 MT-TI-201ENST00000387365 69 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 RPL23AP94-201ENST00000512518 302 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 RNA5SP200-201ENST00000516360 103 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 AC022523.2-201ENST00000561045 150 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 MIR4791-201ENST00000607666 84 ntBASIC2.54□□□□□ -2
BRPF3Q9ULD4 AP000648.3-201ENST00000623539 4507 ntBASIC2.53□□□□□ -2
BRPF3Q9ULD4 RNU6-1067P-201ENST00000384752 107 ntBASIC2.53□□□□□ -2
BRPF3Q9ULD4 AL023284.1-201ENST00000403956 276 ntBASIC2.53□□□□□ -2
BRPF3Q9ULD4 Z98742.3-201ENST00000418637 326 ntBASIC2.53□□□□□ -2
BRPF3Q9ULD4 AC025033.1-201ENST00000463883 194 ntBASIC2.53□□□□□ -2
BRPF3Q9ULD4 MIR4679-2-201ENST00000578358 77 ntBASIC2.53□□□□□ -2
BRPF3Q9ULD4 AL590808.1-201ENST00000618696 141 ntBASIC2.53□□□□□ -2
BRPF3Q9ULD4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.53□□□□□ -2
BRPF3Q9ULD4 RNU6-439P-201ENST00000384188 106 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 Y_RNA.537-201ENST00000384626 109 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 RNU6-1319P-201ENST00000390855 104 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 RNU6-747P-201ENST00000390928 104 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 RNU6-241P-201ENST00000391148 104 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 RNU6-177P-201ENST00000411257 104 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 AL022718.1-201ENST00000412004 84 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 JTBP1-201ENST00000441314 247 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 AC008834.1-201ENST00000511612 175 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.52□□□□□ -2.01
BRPF3Q9ULD4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 Y_RNA.85-201ENST00000363014 111 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 MIR934-201ENST00000401241 83 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 AL161935.2-201ENST00000414627 60 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 RNU7-73P-201ENST00000458743 63 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 RN7SL274P-201ENST00000492268 272 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 RNU1-40P-201ENST00000516816 164 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 RNU1-97P-201ENST00000516872 164 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 MIR3152-201ENST00000579801 74 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 AC012493.3-201ENST00000604494 112 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 AL035470.1-201ENST00000622571 220 ntBASIC2.51□□□□□ -2.01
BRPF3Q9ULD4 RNU6-1107P-201ENST00000364817 104 ntBASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 RNU6-147P-201ENST00000383983 107 ntBASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 SNORA67.3-201ENST00000384366 140 ntBASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 RNU6-913P-201ENST00000390913 95 ntBASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 POLR2J4-204ENST00000418424 324 ntBASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 AL512326.2-201ENST00000426359 151 ntBASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 RNU7-43P-201ENST00000516554 64 ntBASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 MIR3163-201ENST00000581592 73 ntBASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
BRPF3Q9ULD4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 Y_RNA.116-201ENST00000363292 103 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 SNORA63.5-201ENST00000363548 123 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 Y_RNA.362-201ENST00000365518 110 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 RNA5SP259-201ENST00000365541 109 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 SNORA51.10-201ENST00000384418 136 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 SNORA64-201ENST00000384674 134 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 MIR513A1-201ENST00000385138 129 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 SUMO2P12-201ENST00000405924 140 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 RN7SKP223-201ENST00000410582 62 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 AC004812.1-201ENST00000540773 146 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 DNAJC19P9-201ENST00000555084 351 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 uc_338.28-201ENST00000612082 187 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 AC064859.1-201ENST00000624741 174 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 AL589743.1-201ENST00000551932 2712 ntBASIC2.49□□□□□ -2.01
BRPF3Q9ULD4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 MIR653-201ENST00000385279 96 ntBASIC2.48□□□□□ -2.01
BRPF3Q9ULD4 SNORA48.3-201ENST00000391081 134 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 2361.7 ms