Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
CCDC140Q96MF4 SNORA26.6-201ENST00000391256 115 ntBASIC1.96□□□□□ -2.1
CCDC140Q96MF4 AC108938.1-201ENST00000451204 136 ntBASIC1.96□□□□□ -2.1
CCDC140Q96MF4 RNU6-589P-201ENST00000516485 107 ntBASIC1.96□□□□□ -2.1
CCDC140Q96MF4 RNU7-6P-201ENST00000516845 62 ntBASIC1.96□□□□□ -2.1
CCDC140Q96MF4 RNU6-1258P-201ENST00000516911 111 ntBASIC1.96□□□□□ -2.1
CCDC140Q96MF4 MIR548AO-201ENST00000579992 96 ntBASIC1.96□□□□□ -2.1
CCDC140Q96MF4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC140Q96MF4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC140Q96MF4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC140Q96MF4 SNORD1A-201ENST00000364968 72 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 RNU6-880P-201ENST00000384526 107 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 Y_RNA.531-201ENST00000384589 121 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 RNU6-893P-201ENST00000458841 100 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 AC079140.2-201ENST00000506193 142 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 RNA5SP320-201ENST00000516263 124 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 RNA5SP281-201ENST00000516504 135 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 RNA5SP82-201ENST00000516707 92 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 MIR3192-201ENST00000584920 77 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 MIR8055-201ENST00000610739 97 ntBASIC1.95□□□□□ -2.1
CCDC140Q96MF4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC140Q96MF4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC140Q96MF4 SNORA63.5-201ENST00000363548 123 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 RNY4P6-201ENST00000363667 96 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 Y_RNA.549-201ENST00000384657 102 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 MIR27B-201ENST00000385129 97 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 RPS3AP1-201ENST00000413190 320 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 RNA5SP233-201ENST00000459153 113 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 MIR4435-1-201ENST00000582552 80 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 AL096861.1-201ENST00000610899 123 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 GHRLOS.1-201ENST00000610995 70 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 MIR6840-201ENST00000611937 71 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC140Q96MF4 AL161722.3-201ENST00000605789 2983 ntBASIC1.94□□□□□ -2.1
CCDC140Q96MF4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC140Q96MF4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC140Q96MF4 SNORA67.3-201ENST00000384366 140 ntBASIC1.93□□□□□ -2.1
CCDC140Q96MF4 RPS12P2-201ENST00000439728 269 ntBASIC1.93□□□□□ -2.1
CCDC140Q96MF4 AC009474.2-201ENST00000451383 136 ntBASIC1.93□□□□□ -2.1
CCDC140Q96MF4 PDCD5P2-201ENST00000507570 312 ntBASIC1.93□□□□□ -2.1
CCDC140Q96MF4 RNA5SP33-201ENST00000516687 98 ntBASIC1.93□□□□□ -2.1
CCDC140Q96MF4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.93□□□□□ -2.1
CCDC140Q96MF4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC140Q96MF4 MIR3937-201ENST00000580135 106 ntBASIC1.93□□□□□ -2.1
CCDC140Q96MF4 MIR3935-201ENST00000583472 104 ntBASIC1.93□□□□□ -2.1
CCDC140Q96MF4 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.93□□□□□ -2.1
CCDC140Q96MF4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC140Q96MF4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC140Q96MF4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC140Q96MF4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC140Q96MF4 RNU4-82P-201ENST00000362443 140 ntBASIC1.92□□□□□ -2.1
CCDC140Q96MF4 SNORA25.3-201ENST00000363205 127 ntBASIC1.92□□□□□ -2.1
CCDC140Q96MF4 RNA5SP456-201ENST00000364002 114 ntBASIC1.92□□□□□ -2.1
CCDC140Q96MF4 DEFA7P-201ENST00000382676 285 ntBASIC1.92□□□□□ -2.1
CCDC140Q96MF4 MIR3163-201ENST00000581592 73 ntBASIC1.92□□□□□ -2.1
CCDC140Q96MF4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC140Q96MF4 AL357312.1-201ENST00000603879 298 ntBASIC1.92□□□□□ -2.1
CCDC140Q96MF4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
CCDC140Q96MF4 MIR6817-201ENST00000615588 66 ntBASIC1.92□□□□□ -2.1
CCDC140Q96MF4 Y_RNA.470-201ENST00000384307 117 ntBASIC1.91□□□□□ -2.1
CCDC140Q96MF4 AL359511.1-201ENST00000402970 211 ntBASIC1.91□□□□□ -2.1
CCDC140Q96MF4 RNA5SP508-201ENST00000411327 119 ntBASIC1.91□□□□□ -2.1
CCDC140Q96MF4 AC090844.1-201ENST00000422019 156 ntBASIC1.91□□□□□ -2.1
CCDC140Q96MF4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC140Q96MF4 CYP3A52P-201ENST00000563326 91 ntBASIC1.91□□□□□ -2.1
CCDC140Q96MF4 U4.3-201ENST00000621047 82 ntBASIC1.91□□□□□ -2.1
CCDC140Q96MF4 AL359851.1-201ENST00000569460 4997 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 RNA5SP68-201ENST00000363885 119 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 SNORD12C-201ENST00000386307 89 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 AC019129.1-201ENST00000403786 261 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 AC063976.4-201ENST00000421971 163 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 RPL39P39-201ENST00000455840 151 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 AC113410.1-201ENST00000505029 247 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 RNA5SP148-201ENST00000516527 94 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 MIR3670-2-201ENST00000582974 65 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 MIR3670-1-201ENST00000584160 65 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 MIR3670-3-201ENST00000584855 65 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 SNRPGP19-201ENST00000603826 189 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 MIR3670-4-201ENST00000612260 65 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 MIR6841-201ENST00000637129 72 ntBASIC1.9□□□□□ -2.11
CCDC140Q96MF4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC140Q96MF4 MIR302D-201ENST00000362275 68 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 Y_RNA.362-201ENST00000365518 110 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 SNORA32-201ENST00000384072 121 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 Y_RNA.430-201ENST00000384081 110 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 AC245047.7-201ENST00000440265 293 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 RPS23P4-201ENST00000487908 423 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC140Q96MF4 RNU6-412P-201ENST00000516434 106 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 AL035470.1-201ENST00000622571 220 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 Z97988.1-201ENST00000637697 135 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC140Q96MF4 AL589743.1-201ENST00000551932 2712 ntBASIC1.89□□□□□ -2.11
CCDC140Q96MF4 Y_RNA.344-201ENST00000365381 112 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 RNU6-1065P-201ENST00000384513 106 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 SNORD38B-201ENST00000384690 67 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 MIR548D2-201ENST00000384955 97 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 RNA5SP489-201ENST00000410986 109 ntBASIC1.88□□□□□ -2.11
CCDC140Q96MF4 RNU6-602P-201ENST00000411155 105 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms