Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC068339.1-201ENST00000526965 141 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 AC022523.2-201ENST00000561045 150 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 MIR6132-201ENST00000622083 109 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 MIRLET7C-201ENST00000362160 84 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 RNU6-1084P-201ENST00000362498 107 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.265-201ENST00000364677 108 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.336-201ENST00000365307 109 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 RNU6-439P-201ENST00000384188 106 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 MIR802-201ENST00000390235 94 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 RNA5SP482-201ENST00000391269 118 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 RNY4P29-201ENST00000410801 97 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 RNU2-35P-201ENST00000516446 142 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 AP003484.1-201ENST00000530974 250 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 HSPE1P19-201ENST00000603327 295 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 MIR8074-201ENST00000615081 81 ntBASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CLIP3Q96DZ5 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.78-201ENST00000362970 110 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 RNU6-1113P-201ENST00000384348 107 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.544-201ENST00000384650 113 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 MIR548D2-201ENST00000384955 97 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 JTBP1-201ENST00000441314 247 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 STAG3L5P-204ENST00000443759 179 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 RNU7-164P-201ENST00000459221 62 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 UBL5P3-201ENST00000475112 231 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 RNU6-904P-201ENST00000516206 101 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 SNORA44.1-201ENST00000517031 108 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 MIR4305-201ENST00000583252 102 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 AC091932.4-201ENST00000623386 200 ntBASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.11□□□□□ -2.07
CLIP3Q96DZ5 RNU1-133P-201ENST00000364867 167 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 RNA5SP138-201ENST00000365098 114 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 AC087499.4-201ENST00000448505 178 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 snoU13.15-201ENST00000459407 104 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 RNU6-158P-201ENST00000517104 100 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 RNU6-1116P-201ENST00000517269 99 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 MIR3683-201ENST00000580847 82 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 AC021506.2-201ENST00000612354 169 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.818-201ENST00000618813 71 ntBASIC2.1□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.351-201ENST00000365436 96 ntBASIC2.09□□□□□ -2.07
CLIP3Q96DZ5 U8.17-201ENST00000391292 132 ntBASIC2.09□□□□□ -2.07
CLIP3Q96DZ5 MIR1267-201ENST00000408723 78 ntBASIC2.09□□□□□ -2.07
CLIP3Q96DZ5 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.09□□□□□ -2.07
CLIP3Q96DZ5 AC114811.1-201ENST00000507207 168 ntBASIC2.09□□□□□ -2.07
CLIP3Q96DZ5 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.09□□□□□ -2.07
CLIP3Q96DZ5 AC015726.2-201ENST00000620112 122 ntBASIC2.09□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.494-201ENST00000384432 111 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 SNORA64-201ENST00000384674 134 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 Y_RNA.558-201ENST00000384685 113 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 RNY1P7-201ENST00000384743 110 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 MIR504-201ENST00000385065 83 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 MIR30A-201ENST00000385092 71 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 MTATP8P2-201ENST00000435212 202 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 AC099513.1-201ENST00000490423 301 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 RNA5SP200-201ENST00000516360 103 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 SNORA18.7-201ENST00000516910 131 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 RNU7-70P-201ENST00000516941 66 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 AC012493.3-201ENST00000604494 112 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 MIR7843-201ENST00000622274 79 ntBASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CLIP3Q96DZ5 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 MIR759-201ENST00000390224 91 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 AL627390.1-201ENST00000396055 340 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 RNU2-40P-201ENST00000410833 196 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 RNU7-80P-201ENST00000459562 61 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 RNA5SP364-201ENST00000516938 78 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 AL442128.1-201ENST00000615151 90 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 AL162726.3-218ENST00000636401 95 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 MIR219B-201ENST00000637023 88 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 AL596211.1-201ENST00000569873 2277 ntBASIC2.07□□□□□ -2.08
CLIP3Q96DZ5 MIRLET7G-201ENST00000362280 84 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 RNU4-16P-201ENST00000364737 141 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 RNU6-203P-201ENST00000384038 104 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 SNORA26.2-201ENST00000390922 122 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 HMGN2P23-201ENST00000456759 269 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 RNU6-717P-201ENST00000459076 104 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 RNU6-970P-201ENST00000516312 107 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 MIR3198-2-201ENST00000577868 80 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 MIR3163-201ENST00000581592 73 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 AC062037.1-201ENST00000605302 128 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 AC087741.2-201ENST00000619415 172 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 AL513423.1-201ENST00000621695 132 ntBASIC2.06□□□□□ -2.08
CLIP3Q96DZ5 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 MIR302B-201ENST00000362188 73 ntBASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 SNORD114-1-201ENST00000362705 72 ntBASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 Y_RNA.466-201ENST00000384294 113 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms