Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNA5SP465-201ENST00000391195 109 ntBASIC2.43□□□□□ -2.02
USHBP1Q8N6Y0 MIR1283-2-201ENST00000408621 87 ntBASIC2.43□□□□□ -2.02
USHBP1Q8N6Y0 HSPE1P9-201ENST00000440046 311 ntBASIC2.43□□□□□ -2.02
USHBP1Q8N6Y0 RNU7-12P-201ENST00000516030 62 ntBASIC2.43□□□□□ -2.02
USHBP1Q8N6Y0 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.43□□□□□ -2.02
USHBP1Q8N6Y0 AC078899.2-201ENST00000595282 212 ntBASIC2.43□□□□□ -2.02
USHBP1Q8N6Y0 Y_RNA.362-201ENST00000365518 110 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 SNORA51.5-201ENST00000384126 131 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 MIR518A2-201ENST00000384966 87 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 MIR524-201ENST00000385242 87 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 RNA5SP270-201ENST00000411361 118 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 SNX2P2-201ENST00000424553 323 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 AC025033.1-201ENST00000463883 194 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 AC108729.3-201ENST00000513484 108 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 RNU7-193P-201ENST00000516723 65 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 RNU6-250P-201ENST00000516958 103 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 AC121758.2-201ENST00000553271 193 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 MIR4303-201ENST00000581299 66 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 AL035470.1-201ENST00000622571 220 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-34-201ENST00000362441 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-12-201ENST00000362583 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-29-201ENST00000362834 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-9-201ENST00000362912 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-21-201ENST00000362963 81 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-14-201ENST00000363090 81 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-13-201ENST00000363358 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-41-201ENST00000363608 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-11-201ENST00000363616 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-5-201ENST00000363633 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-39-201ENST00000363694 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-4-201ENST00000363810 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-16-201ENST00000363887 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-6-201ENST00000363942 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-42-201ENST00000364273 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-15-201ENST00000364809 81 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-1-201ENST00000364961 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-26-201ENST00000365067 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-10-201ENST00000365073 81 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-43-201ENST00000365503 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-36-201ENST00000365629 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 RNU6-1031P-201ENST00000384773 107 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 MIR520A-201ENST00000384862 85 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 MT-TI-201ENST00000387365 69 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 HMGN2P39-201ENST00000398005 273 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 MIR1267-201ENST00000408723 78 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 RNU4-62P-201ENST00000410125 130 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 BTF3P4-201ENST00000418852 495 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 AL035398.1-201ENST00000430869 322 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 RNU6-717P-201ENST00000459076 104 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 RNU7-96P-201ENST00000459535 64 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 AC107297.1-201ENST00000459991 176 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 RPL39P34-201ENST00000477141 156 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 RNU7-123P-201ENST00000515911 60 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 RNVU1-2-201ENST00000516326 135 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 IGLV3-17-201ENST00000519099 244 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 MIR5582-201ENST00000579697 68 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 HSPE1P19-201ENST00000603327 295 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 SNORD115-40-201ENST00000606510 82 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 AL442644.1-201ENST00000454390 3105 ntBASIC2.41□□□□□ -2.02
USHBP1Q8N6Y0 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
USHBP1Q8N6Y0 MIR302B-201ENST00000362188 73 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 Y_RNA.328-201ENST00000365208 113 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 SNORA4.2-201ENST00000365313 147 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 RNU6-1104P-201ENST00000384723 104 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 SNORA48.1-201ENST00000390879 135 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 RNA5SP338-201ENST00000410495 85 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 RNU2-7P-201ENST00000410794 178 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 RNU6-998P-201ENST00000515894 101 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 SNORA31.25-201ENST00000517242 134 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 MIR4679-1-201ENST00000637619 75 ntBASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
USHBP1Q8N6Y0 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 SNORA1.2-201ENST00000365189 134 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 Y_RNA.494-201ENST00000384432 111 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 RNU6-1053P-201ENST00000515930 101 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 RNU2-35P-201ENST00000516446 142 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 AC068339.1-201ENST00000526965 141 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 SUB1P4-201ENST00000566062 339 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 MIR5009-201ENST00000578736 100 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 MIR3163-201ENST00000581592 73 ntBASIC2.39□□□□□ -2.03
USHBP1Q8N6Y0 U8.6-201ENST00000364939 135 ntBASIC2.38□□□□□ -2.03
USHBP1Q8N6Y0 Y_RNA.369-201ENST00000365568 117 ntBASIC2.38□□□□□ -2.03
USHBP1Q8N6Y0 MIR548D2-201ENST00000384955 97 ntBASIC2.38□□□□□ -2.03
USHBP1Q8N6Y0 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
USHBP1Q8N6Y0 RNY4P30-201ENST00000410216 95 ntBASIC2.38□□□□□ -2.03
USHBP1Q8N6Y0 RNU7-181P-201ENST00000517234 74 ntBASIC2.38□□□□□ -2.03
USHBP1Q8N6Y0 AP001318.4-201ENST00000616637 121 ntBASIC2.38□□□□□ -2.03
USHBP1Q8N6Y0 MIR378A-201ENST00000362177 66 ntBASIC2.37□□□□□ -2.03
USHBP1Q8N6Y0 MIR452-201ENST00000385020 85 ntBASIC2.37□□□□□ -2.03
USHBP1Q8N6Y0 MIR136-201ENST00000385207 82 ntBASIC2.37□□□□□ -2.03
USHBP1Q8N6Y0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.37□□□□□ -2.03
USHBP1Q8N6Y0 AC090821.2-201ENST00000523552 176 ntBASIC2.37□□□□□ -2.03
USHBP1Q8N6Y0 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms