Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 Y_RNA.676-201ENST00000516393 96 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 RNU6-1149P-201ENST00000516810 97 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 Y_RNA.712-201ENST00000517011 92 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 AP003484.1-201ENST00000530974 250 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-40-201ENST00000606510 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD3E-202ENST00000627253 216 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 RNU6-414P-201ENST00000363705 104 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 RNU6-647P-201ENST00000364243 107 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 MIR653-201ENST00000385279 96 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 SNORA67.5-201ENST00000391036 107 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 Y_RNA.617-201ENST00000410920 90 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 AC004965.1-201ENST00000413033 213 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 JTBP1-201ENST00000441314 247 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 RNU6-1211P-201ENST00000459179 105 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 Y_RNA.651-201ENST00000459380 103 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 RNU2-13P-201ENST00000515909 113 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 RNU6-970P-201ENST00000516312 107 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 AC090049.2-201ENST00000550377 109 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.48□□□□□ -2.17
PDLIM4P50479 MIR4713-201ENST00000582691 75 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 AL365222.1-201ENST00000614661 98 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 AC015726.2-201ENST00000620112 122 ntBASIC1.48□□□□□ -2.17
PDLIM4P50479 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.47□□□□□ -2.17
PDLIM4P50479 MIR378A-201ENST00000362177 66 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 RNU6-834P-201ENST00000362367 110 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 Y_RNA.114-201ENST00000363265 113 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 RNU6-309P-201ENST00000364573 106 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 SNORD48-201ENST00000364953 64 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 SNORA1.2-201ENST00000365189 134 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 RNU6-203P-201ENST00000384038 104 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 RNU6-1154P-201ENST00000391001 104 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 U8.17-201ENST00000391292 132 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.47□□□□□ -2.17
PDLIM4P50479 RPS29P11-201ENST00000496507 171 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 SNORD36C-201ENST00000516733 66 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 MIR4285-201ENST00000581001 85 ntBASIC1.47□□□□□ -2.17
PDLIM4P50479 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.47□□□□□ -2.17
PDLIM4P50479 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
PDLIM4P50479 WWP1P1-201ENST00000466609 2769 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 SNORA2.2-201ENST00000365473 135 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 SNORA24-201ENST00000384096 131 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 SNORA22C-201ENST00000384614 134 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 RNU6-997P-201ENST00000384725 107 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 MIR526A1-201ENST00000384897 85 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
PDLIM4P50479 RNU7-80P-201ENST00000459562 61 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 RNU6-1053P-201ENST00000515930 101 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 MIR4498-201ENST00000577599 66 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 SNORA77B-201ENST00000578179 125 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 AL022345.2-201ENST00000606307 135 ntBASIC1.46□□□□□ -2.18
PDLIM4P50479 RNU6-457P-201ENST00000363999 107 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 Y_RNA.454-201ENST00000384224 113 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 MIRLET7F2-201ENST00000385277 83 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 AC093850.1-201ENST00000454121 251 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 RNU7-96P-201ENST00000459535 64 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 RNU6-1333P-201ENST00000516162 93 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 RNU6-1234P-201ENST00000516877 103 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 MIR3618-201ENST00000580330 88 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.45□□□□□ -2.18
PDLIM4P50479 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.44□□□□□ -2.18
PDLIM4P50479 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.44□□□□□ -2.18
PDLIM4P50479 SNORA27-201ENST00000384323 126 ntBASIC1.44□□□□□ -2.18
PDLIM4P50479 SNORA17.3-201ENST00000391159 129 ntBASIC1.44□□□□□ -2.18
PDLIM4P50479 MIR1267-201ENST00000408723 78 ntBASIC1.44□□□□□ -2.18
PDLIM4P50479 Y_RNA.629-201ENST00000411368 105 ntBASIC1.44□□□□□ -2.18
PDLIM4P50479 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.44□□□□□ -2.18
PDLIM4P50479 SNORA74.3-201ENST00000517108 154 ntBASIC1.44□□□□□ -2.18
PDLIM4P50479 MIR4419B-201ENST00000577260 68 ntBASIC1.44□□□□□ -2.18
PDLIM4P50479 MIR4255-201ENST00000579351 72 ntBASIC1.44□□□□□ -2.18
PDLIM4P50479 MIR8074-201ENST00000615081 81 ntBASIC1.44□□□□□ -2.18
PDLIM4P50479 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.43□□□□□ -2.18
PDLIM4P50479 RNU6-349P-201ENST00000362402 107 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 Y_RNA.273-201ENST00000364703 102 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 RNU6-439P-201ENST00000384188 106 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
PDLIM4P50479 AC107297.1-201ENST00000459991 176 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 RPS29P24-201ENST00000486345 171 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 AC008834.1-201ENST00000511612 175 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 RNU6-998P-201ENST00000515894 101 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 SNORA18.7-201ENST00000516910 131 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 SNORA44.1-201ENST00000517031 108 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 MIR4778-201ENST00000577635 80 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 AC015688.6-201ENST00000577737 104 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 SNORD53B-201ENST00000577887 78 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 snoU13.31-201ENST00000607291 104 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 AC103810.8-201ENST00000607347 118 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 AC095038.3-201ENST00000634439 195 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 MIR3914-2-201ENST00000637339 95 ntBASIC1.43□□□□□ -2.18
PDLIM4P50479 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.42□□□□□ -2.18
PDLIM4P50479 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.42□□□□□ -2.18
PDLIM4P50479 RNU6-508P-201ENST00000363231 103 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 Y_RNA.241-201ENST00000364470 117 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 Y_RNA.261-201ENST00000364631 102 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 Y_RNA.294-201ENST00000364916 102 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 Y_RNA.351-201ENST00000365436 96 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 Y_RNA.370-201ENST00000365589 108 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 Y_RNA.537-201ENST00000384626 109 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 MIR516B2-201ENST00000385190 85 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 MIR934-201ENST00000401241 83 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 SNORD123-201ENST00000459473 70 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms