Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR4791-201ENST00000607666 84 ntBASIC2.35□□□□□ -2.03
LIG3P49916 RN7SL853P-201ENST00000617250 223 ntBASIC2.35□□□□□ -2.03
LIG3P49916 AC009831.4-201ENST00000620744 325 ntBASIC2.35□□□□□ -2.03
LIG3P49916 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
LIG3P49916 AC244636.1-201ENST00000421152 228 ntBASIC2.34□□□□□ -2.03
LIG3P49916 JTBP1-201ENST00000441314 247 ntBASIC2.34□□□□□ -2.03
LIG3P49916 RNU7-73P-201ENST00000458743 63 ntBASIC2.34□□□□□ -2.03
LIG3P49916 RNU6-322P-201ENST00000516010 103 ntBASIC2.34□□□□□ -2.03
LIG3P49916 SNORA31.4-201ENST00000516049 129 ntBASIC2.34□□□□□ -2.03
LIG3P49916 RNU7-43P-201ENST00000516554 64 ntBASIC2.34□□□□□ -2.03
LIG3P49916 AL773524.1-201ENST00000614065 229 ntBASIC2.34□□□□□ -2.03
LIG3P49916 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.34□□□□□ -2.03
LIG3P49916 RNU6-661P-201ENST00000362409 107 ntBASIC2.33□□□□□ -2.04
LIG3P49916 SNORA6-201ENST00000384033 151 ntBASIC2.33□□□□□ -2.04
LIG3P49916 RNU6-1319P-201ENST00000390855 104 ntBASIC2.33□□□□□ -2.04
LIG3P49916 RNU6-747P-201ENST00000390928 104 ntBASIC2.33□□□□□ -2.04
LIG3P49916 RNU6-241P-201ENST00000391148 104 ntBASIC2.33□□□□□ -2.04
LIG3P49916 SNORA3.2-201ENST00000408221 125 ntBASIC2.33□□□□□ -2.04
LIG3P49916 RNU6-177P-201ENST00000411257 104 ntBASIC2.33□□□□□ -2.04
LIG3P49916 DNAJC19P9-201ENST00000555084 351 ntBASIC2.33□□□□□ -2.04
LIG3P49916 MIR3163-201ENST00000581592 73 ntBASIC2.33□□□□□ -2.04
LIG3P49916 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.33□□□□□ -2.04
LIG3P49916 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
LIG3P49916 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.32□□□□□ -2.04
LIG3P49916 ZNF658B-202ENST00000615961 3375 ntBASIC2.32□□□□□ -2.04
LIG3P49916 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
LIG3P49916 AL589743.1-201ENST00000551932 2712 ntBASIC2.32□□□□□ -2.04
LIG3P49916 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LIG3P49916 Y_RNA.85-201ENST00000363014 111 ntBASIC2.32□□□□□ -2.04
LIG3P49916 SNORA51.10-201ENST00000384418 136 ntBASIC2.32□□□□□ -2.04
LIG3P49916 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
LIG3P49916 AL023284.1-201ENST00000403956 276 ntBASIC2.32□□□□□ -2.04
LIG3P49916 Z98742.3-201ENST00000418637 326 ntBASIC2.32□□□□□ -2.04
LIG3P49916 RNU7-45P-201ENST00000459460 63 ntBASIC2.32□□□□□ -2.04
LIG3P49916 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.32□□□□□ -2.04
LIG3P49916 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.32□□□□□ -2.04
LIG3P49916 AC022523.2-201ENST00000561045 150 ntBASIC2.32□□□□□ -2.04
LIG3P49916 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LIG3P49916 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
LIG3P49916 AL596028.1-201ENST00000326971 197 ntBASIC2.31□□□□□ -2.04
LIG3P49916 RNU6-1107P-201ENST00000364817 104 ntBASIC2.31□□□□□ -2.04
LIG3P49916 RNA5SP259-201ENST00000365541 109 ntBASIC2.31□□□□□ -2.04
LIG3P49916 RNU6-439P-201ENST00000384188 106 ntBASIC2.31□□□□□ -2.04
LIG3P49916 MIR513A1-201ENST00000385138 129 ntBASIC2.31□□□□□ -2.04
LIG3P49916 AL161935.2-201ENST00000414627 60 ntBASIC2.31□□□□□ -2.04
LIG3P49916 AC022254.1-201ENST00000567857 235 ntBASIC2.31□□□□□ -2.04
LIG3P49916 MIR5007-201ENST00000583098 95 ntBASIC2.31□□□□□ -2.04
LIG3P49916 AC095038.3-201ENST00000634439 195 ntBASIC2.31□□□□□ -2.04
LIG3P49916 Y_RNA.49-201ENST00000362714 112 ntBASIC2.3□□□□□ -2.04
LIG3P49916 Y_RNA.116-201ENST00000363292 103 ntBASIC2.3□□□□□ -2.04
LIG3P49916 Y_RNA.362-201ENST00000365518 110 ntBASIC2.3□□□□□ -2.04
LIG3P49916 Y_RNA.549-201ENST00000384657 102 ntBASIC2.3□□□□□ -2.04
LIG3P49916 RNU6-1104P-201ENST00000384723 104 ntBASIC2.3□□□□□ -2.04
LIG3P49916 POLR2J4-204ENST00000418424 324 ntBASIC2.3□□□□□ -2.04
LIG3P49916 RNA5SP364-201ENST00000516938 78 ntBASIC2.3□□□□□ -2.04
LIG3P49916 IGKV3-31-201ENST00000523109 329 ntBASIC2.3□□□□□ -2.04
LIG3P49916 MIR4764-201ENST00000580680 88 ntBASIC2.3□□□□□ -2.04
LIG3P49916 MIR3945-201ENST00000581853 98 ntBASIC2.3□□□□□ -2.04
LIG3P49916 MIR4713-201ENST00000582691 75 ntBASIC2.3□□□□□ -2.04
LIG3P49916 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.3□□□□□ -2.04
LIG3P49916 AL035470.1-201ENST00000622571 220 ntBASIC2.3□□□□□ -2.04
LIG3P49916 AC008133.2-201ENST00000624540 351 ntBASIC2.3□□□□□ -2.04
LIG3P49916 SNORA63.5-201ENST00000363548 123 ntBASIC2.29□□□□□ -2.04
LIG3P49916 MIR520C-201ENST00000385005 87 ntBASIC2.29□□□□□ -2.04
LIG3P49916 MIR653-201ENST00000385279 96 ntBASIC2.29□□□□□ -2.04
LIG3P49916 MT-TI-201ENST00000387365 69 ntBASIC2.29□□□□□ -2.04
LIG3P49916 AL451046.2-201ENST00000403074 277 ntBASIC2.29□□□□□ -2.04
LIG3P49916 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.29□□□□□ -2.04
LIG3P49916 snoU13.16-201ENST00000459350 104 ntBASIC2.29□□□□□ -2.04
LIG3P49916 AC004812.1-201ENST00000540773 146 ntBASIC2.29□□□□□ -2.04
LIG3P49916 AL020996.3-201ENST00000606617 222 ntBASIC2.29□□□□□ -2.04
LIG3P49916 uc_338.28-201ENST00000612082 187 ntBASIC2.29□□□□□ -2.04
LIG3P49916 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LIG3P49916 SNORA22.1-201ENST00000362701 134 ntBASIC2.28□□□□□ -2.04
LIG3P49916 RNU6-147P-201ENST00000383983 107 ntBASIC2.28□□□□□ -2.04
LIG3P49916 Y_RNA.531-201ENST00000384589 121 ntBASIC2.28□□□□□ -2.04
LIG3P49916 MIR548D2-201ENST00000384955 97 ntBASIC2.28□□□□□ -2.04
LIG3P49916 RNU6-913P-201ENST00000390913 95 ntBASIC2.28□□□□□ -2.04
LIG3P49916 RNA5SP425-201ENST00000410336 112 ntBASIC2.28□□□□□ -2.04
LIG3P49916 AL031737.1-201ENST00000450125 223 ntBASIC2.28□□□□□ -2.04
LIG3P49916 RNU7-113P-201ENST00000459273 62 ntBASIC2.28□□□□□ -2.04
LIG3P49916 uc_338.20-201ENST00000621563 178 ntBASIC2.28□□□□□ -2.04
LIG3P49916 MIR6717-201ENST00000622747 73 ntBASIC2.28□□□□□ -2.04
LIG3P49916 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LIG3P49916 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
LIG3P49916 SNORA26.6-201ENST00000391256 115 ntBASIC2.27□□□□□ -2.05
LIG3P49916 AL512326.2-201ENST00000426359 151 ntBASIC2.27□□□□□ -2.05
LIG3P49916 AL356320.1-201ENST00000429616 163 ntBASIC2.27□□□□□ -2.05
LIG3P49916 RPS23P4-201ENST00000487908 423 ntBASIC2.27□□□□□ -2.05
LIG3P49916 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.27□□□□□ -2.05
LIG3P49916 MIR3613-201ENST00000579844 87 ntBASIC2.27□□□□□ -2.05
LIG3P49916 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.27□□□□□ -2.05
LIG3P49916 MIR6766-201ENST00000622641 72 ntBASIC2.27□□□□□ -2.05
LIG3P49916 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LIG3P49916 U8.2-201ENST00000363156 134 ntBASIC2.26□□□□□ -2.05
LIG3P49916 Y_RNA.299-201ENST00000364973 94 ntBASIC2.26□□□□□ -2.05
LIG3P49916 Y_RNA.430-201ENST00000384081 110 ntBASIC2.26□□□□□ -2.05
LIG3P49916 SNORA70B-201ENST00000384210 135 ntBASIC2.26□□□□□ -2.05
LIG3P49916 RNU6-106P-201ENST00000384405 107 ntBASIC2.26□□□□□ -2.05
LIG3P49916 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms