Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-484P-201ENST00000384016 107 ntBASIC1.21□□□□□ -2.22
CTCFP49711 RNU6-574P-201ENST00000384265 107 ntBASIC1.21□□□□□ -2.22
CTCFP49711 Y_RNA.477-201ENST00000384352 108 ntBASIC1.21□□□□□ -2.22
CTCFP49711 SNORA75.2-201ENST00000391138 150 ntBASIC1.21□□□□□ -2.22
CTCFP49711 SNORA75.3-201ENST00000391231 150 ntBASIC1.21□□□□□ -2.22
CTCFP49711 MIR1197-201ENST00000408818 88 ntBASIC1.21□□□□□ -2.22
CTCFP49711 OR2A41P-201ENST00000473586 105 ntBASIC1.21□□□□□ -2.22
CTCFP49711 Y_RNA.680-201ENST00000516441 93 ntBASIC1.21□□□□□ -2.22
CTCFP49711 AL162730.1-201ENST00000605734 292 ntBASIC1.21□□□□□ -2.22
CTCFP49711 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
CTCFP49711 SNORA25.3-201ENST00000363205 127 ntBASIC1.2□□□□□ -2.22
CTCFP49711 Y_RNA.193-201ENST00000363979 102 ntBASIC1.2□□□□□ -2.22
CTCFP49711 Y_RNA.262-201ENST00000364641 102 ntBASIC1.2□□□□□ -2.22
CTCFP49711 RNY3P5-201ENST00000384127 102 ntBASIC1.2□□□□□ -2.22
CTCFP49711 Y_RNA.452-201ENST00000384202 108 ntBASIC1.2□□□□□ -2.22
CTCFP49711 SNORA80D-201ENST00000384488 135 ntBASIC1.2□□□□□ -2.22
CTCFP49711 MIR570-201ENST00000384917 97 ntBASIC1.2□□□□□ -2.22
CTCFP49711 MIR548A2-201ENST00000384956 97 ntBASIC1.2□□□□□ -2.22
CTCFP49711 MIR1185-1-201ENST00000408598 86 ntBASIC1.2□□□□□ -2.22
CTCFP49711 RNU2-55P-201ENST00000411146 174 ntBASIC1.2□□□□□ -2.22
CTCFP49711 RNU6-126P-201ENST00000516685 103 ntBASIC1.2□□□□□ -2.22
CTCFP49711 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CTCFP49711 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
CTCFP49711 RNU6-702P-201ENST00000364982 107 ntBASIC1.19□□□□□ -2.22
CTCFP49711 RNY4P28-201ENST00000365281 93 ntBASIC1.19□□□□□ -2.22
CTCFP49711 RNU4-17P-201ENST00000365598 141 ntBASIC1.19□□□□□ -2.22
CTCFP49711 SNORD24-201ENST00000383884 75 ntBASIC1.19□□□□□ -2.22
CTCFP49711 MIR518F-201ENST00000384973 87 ntBASIC1.19□□□□□ -2.22
CTCFP49711 AL606845.1-201ENST00000404881 255 ntBASIC1.19□□□□□ -2.22
CTCFP49711 AL591704.2-201ENST00000421658 181 ntBASIC1.19□□□□□ -2.22
CTCFP49711 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.19□□□□□ -2.22
CTCFP49711 RNU7-21P-201ENST00000459430 62 ntBASIC1.19□□□□□ -2.22
CTCFP49711 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.19□□□□□ -2.22
CTCFP49711 RNU2-13P-201ENST00000515909 113 ntBASIC1.19□□□□□ -2.22
CTCFP49711 RNU11-2P-201ENST00000516898 142 ntBASIC1.19□□□□□ -2.22
CTCFP49711 MIR3128-201ENST00000581957 66 ntBASIC1.19□□□□□ -2.22
CTCFP49711 7SK.10-201ENST00000621414 298 ntBASIC1.19□□□□□ -2.22
CTCFP49711 MIR4251-201ENST00000635819 61 ntBASIC1.19□□□□□ -2.22
CTCFP49711 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
CTCFP49711 MIR103A2-201ENST00000362154 78 ntBASIC1.18□□□□□ -2.22
CTCFP49711 Y_RNA.66-201ENST00000362862 102 ntBASIC1.18□□□□□ -2.22
CTCFP49711 SNORD61-201ENST00000384252 73 ntBASIC1.18□□□□□ -2.22
CTCFP49711 RNU6-463P-201ENST00000384340 107 ntBASIC1.18□□□□□ -2.22
CTCFP49711 Y_RNA.478-201ENST00000384358 107 ntBASIC1.18□□□□□ -2.22
CTCFP49711 RNU6-1228P-201ENST00000391014 107 ntBASIC1.18□□□□□ -2.22
CTCFP49711 MIR1302-7-201ENST00000408841 72 ntBASIC1.18□□□□□ -2.22
CTCFP49711 AC063976.4-201ENST00000421971 163 ntBASIC1.18□□□□□ -2.22
CTCFP49711 AC002429.1-201ENST00000437672 148 ntBASIC1.18□□□□□ -2.22
CTCFP49711 SNRPGP8-201ENST00000454064 226 ntBASIC1.18□□□□□ -2.22
CTCFP49711 RNU6-1299P-201ENST00000516316 100 ntBASIC1.18□□□□□ -2.22
CTCFP49711 MIR3149-201ENST00000584629 83 ntBASIC1.18□□□□□ -2.22
CTCFP49711 RNU6-888P-201ENST00000363010 101 ntBASIC1.17□□□□□ -2.22
CTCFP49711 Y_RNA.91-201ENST00000363042 107 ntBASIC1.17□□□□□ -2.22
CTCFP49711 Y_RNA.144-201ENST00000363521 113 ntBASIC1.17□□□□□ -2.22
CTCFP49711 Y_RNA.280-201ENST00000364765 112 ntBASIC1.17□□□□□ -2.22
CTCFP49711 SNORA1.2-201ENST00000365189 134 ntBASIC1.17□□□□□ -2.22
CTCFP49711 Y_RNA.370-201ENST00000365589 108 ntBASIC1.17□□□□□ -2.22
CTCFP49711 Y_RNA.622-201ENST00000411091 108 ntBASIC1.17□□□□□ -2.22
CTCFP49711 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.17□□□□□ -2.22
CTCFP49711 RNU6-693P-201ENST00000516134 107 ntBASIC1.17□□□□□ -2.22
CTCFP49711 RNU6-365P-201ENST00000517113 106 ntBASIC1.17□□□□□ -2.22
CTCFP49711 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.17□□□□□ -2.22
CTCFP49711 AC109810.1-201ENST00000534066 224 ntBASIC1.17□□□□□ -2.22
CTCFP49711 AC097639.2-201ENST00000603159 172 ntBASIC1.17□□□□□ -2.22
CTCFP49711 MIR4791-201ENST00000607666 84 ntBASIC1.17□□□□□ -2.22
CTCFP49711 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
CTCFP49711 Y_RNA.60-201ENST00000362831 98 ntBASIC1.16□□□□□ -2.22
CTCFP49711 Y_RNA.65-201ENST00000362846 100 ntBASIC1.16□□□□□ -2.22
CTCFP49711 SNORD115-28-201ENST00000363931 81 ntBASIC1.16□□□□□ -2.22
CTCFP49711 Y_RNA.634-201ENST00000364811 113 ntBASIC1.16□□□□□ -2.22
CTCFP49711 Y_RNA.432-201ENST00000384087 111 ntBASIC1.16□□□□□ -2.22
CTCFP49711 Y_RNA.447-201ENST00000384184 113 ntBASIC1.16□□□□□ -2.22
CTCFP49711 Y_RNA.537-201ENST00000384626 109 ntBASIC1.16□□□□□ -2.22
CTCFP49711 RNU6-938P-201ENST00000411285 103 ntBASIC1.16□□□□□ -2.22
CTCFP49711 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.16□□□□□ -2.22
CTCFP49711 AL392103.1-201ENST00000447000 198 ntBASIC1.16□□□□□ -2.22
CTCFP49711 RNU6-1023P-201ENST00000516137 106 ntBASIC1.16□□□□□ -2.22
CTCFP49711 RNY3P16-201ENST00000516338 101 ntBASIC1.16□□□□□ -2.22
CTCFP49711 RNA5SP153-201ENST00000516498 76 ntBASIC1.16□□□□□ -2.22
CTCFP49711 SNORD114-21-201ENST00000606412 72 ntBASIC1.16□□□□□ -2.22
CTCFP49711 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.16□□□□□ -2.22
CTCFP49711 SNORD45.3-201ENST00000363836 72 ntBASIC1.15□□□□□ -2.23
CTCFP49711 Y_RNA.307-201ENST00000365022 117 ntBASIC1.15□□□□□ -2.23
CTCFP49711 SNORA22-201ENST00000383907 134 ntBASIC1.15□□□□□ -2.23
CTCFP49711 SNORA51.10-201ENST00000384418 136 ntBASIC1.15□□□□□ -2.23
CTCFP49711 Y_RNA.494-201ENST00000384432 111 ntBASIC1.15□□□□□ -2.23
CTCFP49711 SNORA22C-201ENST00000384614 134 ntBASIC1.15□□□□□ -2.23
CTCFP49711 RNU6-847P-201ENST00000411115 108 ntBASIC1.15□□□□□ -2.23
CTCFP49711 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.15□□□□□ -2.23
CTCFP49711 RNU6-561P-201ENST00000516222 102 ntBASIC1.15□□□□□ -2.23
CTCFP49711 RNU6-504P-201ENST00000516568 104 ntBASIC1.15□□□□□ -2.23
CTCFP49711 RNU6-1270P-201ENST00000517128 108 ntBASIC1.15□□□□□ -2.23
CTCFP49711 AC008163.1-202ENST00000636004 2889 ntBASIC1.15□□□□□ -2.23
CTCFP49711 Y_RNA.37-201ENST00000362606 108 ntBASIC1.14□□□□□ -2.23
CTCFP49711 VTRNA1-3-201ENST00000365645 89 ntBASIC1.14□□□□□ -2.23
CTCFP49711 RNU6-1067P-201ENST00000384752 107 ntBASIC1.14□□□□□ -2.23
CTCFP49711 SNORA26-201ENST00000391286 122 ntBASIC1.14□□□□□ -2.23
CTCFP49711 RNU2-70P-201ENST00000410718 179 ntBASIC1.14□□□□□ -2.23
CTCFP49711 Y_RNA.626-201ENST00000411288 95 ntBASIC1.14□□□□□ -2.23
CTCFP49711 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms