Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 RNU2-11P-201ENST00000459191 187 ntBASIC2.18□□□□□ -2.06
SOX9P48436 AL513534.2-201ENST00000603836 250 ntBASIC2.18□□□□□ -2.06
SOX9P48436 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.18□□□□□ -2.06
SOX9P48436 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.18□□□□□ -2.06
SOX9P48436 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC2.18□□□□□ -2.06
SOX9P48436 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
SOX9P48436 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.18□□□□□ -2.06
SOX9P48436 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SOX9P48436 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
SOX9P48436 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
SOX9P48436 Y_RNA.140-201ENST00000363474 103 ntBASIC2.17□□□□□ -2.06
SOX9P48436 Y_RNA.261-201ENST00000364631 102 ntBASIC2.17□□□□□ -2.06
SOX9P48436 Y_RNA.338-201ENST00000365320 114 ntBASIC2.17□□□□□ -2.06
SOX9P48436 SNORA51.10-201ENST00000384418 136 ntBASIC2.17□□□□□ -2.06
SOX9P48436 Y_RNA.537-201ENST00000384626 109 ntBASIC2.17□□□□□ -2.06
SOX9P48436 RNU7-107P-201ENST00000459121 61 ntBASIC2.17□□□□□ -2.06
SOX9P48436 RNU6-240P-201ENST00000516098 97 ntBASIC2.17□□□□□ -2.06
SOX9P48436 RNU6-922P-201ENST00000516753 99 ntBASIC2.17□□□□□ -2.06
SOX9P48436 AL357312.1-201ENST00000603879 298 ntBASIC2.17□□□□□ -2.06
SOX9P48436 Y_RNA.783-201ENST00000613546 102 ntBASIC2.17□□□□□ -2.06
SOX9P48436 AL137067.1-201ENST00000615933 120 ntBASIC2.17□□□□□ -2.06
SOX9P48436 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
SOX9P48436 SNORD33-201ENST00000362761 85 ntBASIC2.16□□□□□ -2.06
SOX9P48436 Y_RNA.164-201ENST00000363709 102 ntBASIC2.16□□□□□ -2.06
SOX9P48436 Y_RNA.280-201ENST00000364765 112 ntBASIC2.16□□□□□ -2.06
SOX9P48436 MIR570-201ENST00000384917 97 ntBASIC2.16□□□□□ -2.06
SOX9P48436 RN7SKP19-201ENST00000516016 252 ntBASIC2.16□□□□□ -2.06
SOX9P48436 RNU6-772P-201ENST00000516042 105 ntBASIC2.16□□□□□ -2.06
SOX9P48436 RNU6-659P-201ENST00000516454 104 ntBASIC2.16□□□□□ -2.06
SOX9P48436 MIR4764-201ENST00000580680 88 ntBASIC2.16□□□□□ -2.06
SOX9P48436 MIR4791-201ENST00000607666 84 ntBASIC2.16□□□□□ -2.06
SOX9P48436 MIR6845-201ENST00000613182 61 ntBASIC2.16□□□□□ -2.06
SOX9P48436 HMGN2P38-201ENST00000423806 265 ntBASIC2.15□□□□□ -2.07
SOX9P48436 MIR3198-2-201ENST00000577868 80 ntBASIC2.15□□□□□ -2.07
SOX9P48436 AC008133.2-201ENST00000624540 351 ntBASIC2.15□□□□□ -2.07
SOX9P48436 AP000553.5-201ENST00000641933 54 ntBASIC2.15□□□□□ -2.07
SOX9P48436 RNA5SP261-201ENST00000410536 106 ntBASIC2.14□□□□□ -2.07
SOX9P48436 RNA5SP489-201ENST00000410986 109 ntBASIC2.14□□□□□ -2.07
SOX9P48436 SNORD111.1-201ENST00000516421 86 ntBASIC2.14□□□□□ -2.07
SOX9P48436 AC108081.1-201ENST00000604358 221 ntBASIC2.14□□□□□ -2.07
SOX9P48436 AC021443.1-201ENST00000604478 211 ntBASIC2.14□□□□□ -2.07
SOX9P48436 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
SOX9P48436 Y_RNA.4-201ENST00000362333 112 ntBASIC2.13□□□□□ -2.07
SOX9P48436 RNU1-17P-201ENST00000363022 152 ntBASIC2.13□□□□□ -2.07
SOX9P48436 RNA5SP205-201ENST00000364653 136 ntBASIC2.13□□□□□ -2.07
SOX9P48436 Y_RNA.366-201ENST00000365540 102 ntBASIC2.13□□□□□ -2.07
SOX9P48436 RNU6-1065P-201ENST00000384513 106 ntBASIC2.13□□□□□ -2.07
SOX9P48436 AC090255.1-201ENST00000495779 349 ntBASIC2.13□□□□□ -2.07
SOX9P48436 AC079140.2-201ENST00000506193 142 ntBASIC2.13□□□□□ -2.07
SOX9P48436 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.13□□□□□ -2.07
SOX9P48436 MIR514B-201ENST00000516774 80 ntBASIC2.13□□□□□ -2.07
SOX9P48436 Y_RNA.712-201ENST00000517011 92 ntBASIC2.13□□□□□ -2.07
SOX9P48436 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.13□□□□□ -2.07
SOX9P48436 MIR3152-201ENST00000579801 74 ntBASIC2.13□□□□□ -2.07
SOX9P48436 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.12□□□□□ -2.07
SOX9P48436 MIRLET7G-201ENST00000362280 84 ntBASIC2.12□□□□□ -2.07
SOX9P48436 RNU6-349P-201ENST00000362402 107 ntBASIC2.12□□□□□ -2.07
SOX9P48436 RNU4-16P-201ENST00000364737 141 ntBASIC2.12□□□□□ -2.07
SOX9P48436 SNORA26.9-201ENST00000391322 122 ntBASIC2.12□□□□□ -2.07
SOX9P48436 MIR1263-201ENST00000408324 86 ntBASIC2.12□□□□□ -2.07
SOX9P48436 Y_RNA.617-201ENST00000410920 90 ntBASIC2.12□□□□□ -2.07
SOX9P48436 AC005908.1-201ENST00000468701 347 ntBASIC2.12□□□□□ -2.07
SOX9P48436 RNU2-13P-201ENST00000515909 113 ntBASIC2.12□□□□□ -2.07
SOX9P48436 DNAJC19P9-201ENST00000555084 351 ntBASIC2.12□□□□□ -2.07
SOX9P48436 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.12□□□□□ -2.07
SOX9P48436 AL096840.1-201ENST00000603287 93 ntBASIC2.12□□□□□ -2.07
SOX9P48436 GHRLOS.1-201ENST00000610995 70 ntBASIC2.12□□□□□ -2.07
SOX9P48436 U6.95-201ENST00000636931 70 ntBASIC2.12□□□□□ -2.07
SOX9P48436 AC092881.1-201ENST00000638218 2733 ntBASIC2.11□□□□□ -2.07
SOX9P48436 SNORD58C-201ENST00000365223 64 ntBASIC2.11□□□□□ -2.07
SOX9P48436 Y_RNA.346-201ENST00000365385 112 ntBASIC2.11□□□□□ -2.07
SOX9P48436 SNORA24-201ENST00000384096 131 ntBASIC2.11□□□□□ -2.07
SOX9P48436 RPL39P39-201ENST00000455840 151 ntBASIC2.11□□□□□ -2.07
SOX9P48436 RNU7-73P-201ENST00000458743 63 ntBASIC2.11□□□□□ -2.07
SOX9P48436 RNU6-893P-201ENST00000458841 100 ntBASIC2.11□□□□□ -2.07
SOX9P48436 snoU13.16-201ENST00000459350 104 ntBASIC2.11□□□□□ -2.07
SOX9P48436 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.11□□□□□ -2.07
SOX9P48436 MIR3937-201ENST00000580135 106 ntBASIC2.11□□□□□ -2.07
SOX9P48436 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.11□□□□□ -2.07
SOX9P48436 MIR7111-201ENST00000619751 72 ntBASIC2.11□□□□□ -2.07
SOX9P48436 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
SOX9P48436 MIR583-201ENST00000384846 75 ntBASIC2.1□□□□□ -2.07
SOX9P48436 SNORA40.18-201ENST00000391200 128 ntBASIC2.1□□□□□ -2.07
SOX9P48436 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.1□□□□□ -2.07
SOX9P48436 RNA5SP136-201ENST00000410906 107 ntBASIC2.1□□□□□ -2.07
SOX9P48436 AC019176.1-201ENST00000518519 225 ntBASIC2.1□□□□□ -2.07
SOX9P48436 MIR4448-201ENST00000584360 86 ntBASIC2.1□□□□□ -2.07
SOX9P48436 SNRPGP19-201ENST00000603826 189 ntBASIC2.1□□□□□ -2.07
SOX9P48436 AC025166.1-201ENST00000612411 163 ntBASIC2.1□□□□□ -2.07
SOX9P48436 AC021613.1-201ENST00000623880 111 ntBASIC2.1□□□□□ -2.07
SOX9P48436 MIR4251-201ENST00000635819 61 ntBASIC2.1□□□□□ -2.07
SOX9P48436 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.07
SOX9P48436 RNA5SP48-201ENST00000363969 126 ntBASIC2.09□□□□□ -2.07
SOX9P48436 RNU4-52P-201ENST00000384209 138 ntBASIC2.09□□□□□ -2.07
SOX9P48436 Y_RNA.525-201ENST00000384570 113 ntBASIC2.09□□□□□ -2.07
SOX9P48436 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.09□□□□□ -2.07
SOX9P48436 RNU6-947P-201ENST00000516264 106 ntBASIC2.09□□□□□ -2.07
SOX9P48436 RNU6-781P-201ENST00000516377 101 ntBASIC2.09□□□□□ -2.07
SOX9P48436 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.09□□□□□ -2.07
SOX9P48436 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms