Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SNORD113-1-201ENST00000365321 69 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 MIR30A-201ENST00000385092 71 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 MIR653-201ENST00000385279 96 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 SNORA17.3-201ENST00000391159 129 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 MIR934-201ENST00000401241 83 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 Y_RNA.692-201ENST00000516627 105 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 SNORA74.3-201ENST00000517108 154 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 AC090821.2-201ENST00000523552 176 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 MIR3198-2-201ENST00000577868 80 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 U7.2-201ENST00000607576 63 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 AC084768.2-201ENST00000622736 221 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 AL596211.1-201ENST00000569873 2277 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 Y_RNA.261-201ENST00000364631 102 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 HSPE1P24-201ENST00000450782 238 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 RNU7-107P-201ENST00000459121 61 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 RNU6-922P-201ENST00000516753 99 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 IGKV1-22-201ENST00000524313 326 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 MIR4498-201ENST00000577599 66 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 AC012493.3-201ENST00000604494 112 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.43□□□□□ -2.18
HOXD3P31249 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
HOXD3P31249 MIR378A-201ENST00000362177 66 ntBASIC1.42□□□□□ -2.18
HOXD3P31249 SNORD1A-201ENST00000364968 72 ntBASIC1.42□□□□□ -2.18
HOXD3P31249 SNORD41-201ENST00000386967 70 ntBASIC1.42□□□□□ -2.18
HOXD3P31249 RNU6-958P-201ENST00000516995 106 ntBASIC1.42□□□□□ -2.18
HOXD3P31249 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.42□□□□□ -2.18
HOXD3P31249 AC090049.2-201ENST00000550377 109 ntBASIC1.42□□□□□ -2.18
HOXD3P31249 MIR4285-201ENST00000581001 85 ntBASIC1.42□□□□□ -2.18
HOXD3P31249 MIR4791-201ENST00000607666 84 ntBASIC1.42□□□□□ -2.18
HOXD3P31249 AC091932.4-201ENST00000623386 200 ntBASIC1.42□□□□□ -2.18
HOXD3P31249 SNORD115-34-201ENST00000362441 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-12-201ENST00000362583 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-29-201ENST00000362834 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-9-201ENST00000362912 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-21-201ENST00000362963 81 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-14-201ENST00000363090 81 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-13-201ENST00000363358 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-41-201ENST00000363608 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-11-201ENST00000363616 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-5-201ENST00000363633 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-39-201ENST00000363694 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-4-201ENST00000363810 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-16-201ENST00000363887 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-6-201ENST00000363942 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-42-201ENST00000364273 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-15-201ENST00000364809 81 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-1-201ENST00000364961 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-26-201ENST00000365067 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-10-201ENST00000365073 81 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-43-201ENST00000365503 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-36-201ENST00000365629 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 MIR539-201ENST00000365690 78 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 RNU6-22P-201ENST00000384355 107 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 RNU6-1117P-201ENST00000384525 104 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 AL627390.1-201ENST00000396055 340 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 snoU13.9-201ENST00000458927 103 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 RNU7-67P-201ENST00000459003 62 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 RNU2-11P-201ENST00000459191 187 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 RNU7-45P-201ENST00000459460 63 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 RPS29P24-201ENST00000486345 171 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 RNU2-13P-201ENST00000515909 113 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 AC019176.1-201ENST00000518519 225 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.41□□□□□ -2.18
HOXD3P31249 MIR4764-201ENST00000580680 88 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 MIR4781-201ENST00000585250 76 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.41□□□□□ -2.18
HOXD3P31249 SNORD115-40-201ENST00000606510 82 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.41□□□□□ -2.18
HOXD3P31249 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.4□□□□□ -2.18
HOXD3P31249 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.4□□□□□ -2.19
HOXD3P31249 MIR302D-201ENST00000362275 68 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 RNU6-349P-201ENST00000362402 107 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 SNORA16.1-201ENST00000364597 132 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 Y_RNA.280-201ENST00000364765 112 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 MIR520C-201ENST00000385005 87 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.4□□□□□ -2.19
HOXD3P31249 AL158147.1-201ENST00000443970 75 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 RNU6-998P-201ENST00000515894 101 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 RNU7-41P-201ENST00000515917 61 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 RNU6-240P-201ENST00000516098 97 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 RNU7-70P-201ENST00000516941 66 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 Y_RNA.757-201ENST00000578934 114 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 MIR3192-201ENST00000584920 77 ntBASIC1.4□□□□□ -2.19
HOXD3P31249 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.4□□□□□ -2.19
HOXD3P31249 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
HOXD3P31249 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
HOXD3P31249 RNU4-16P-201ENST00000364737 141 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 RNU1-133P-201ENST00000364867 167 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 SNORA1.2-201ENST00000365189 134 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 Y_RNA.366-201ENST00000365540 102 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 RNU6-80P-201ENST00000384195 107 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 MIR9-3-201ENST00000385084 90 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 RNU6-913P-201ENST00000390913 95 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 AL451046.2-201ENST00000403074 277 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 Y_RNA.630-201ENST00000411370 108 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 MTATP6P21-201ENST00000440681 189 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 AC107297.1-201ENST00000459991 176 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 RNU6-1333P-201ENST00000516162 93 ntBASIC1.39□□□□□ -2.19
HOXD3P31249 RNU6-947P-201ENST00000516264 106 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 158.9 ms