Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
COL3A1P02461 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 Y_RNA.818-201ENST00000618813 71 ntBASIC1.97□□□□□ -2.09
COL3A1P02461 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
COL3A1P02461 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
COL3A1P02461 RNU6-349P-201ENST00000362402 107 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 Y_RNA.78-201ENST00000362970 110 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 SNORD68-201ENST00000363214 84 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 SNORD14E-201ENST00000364009 85 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 Y_RNA.220-201ENST00000364244 109 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 SNORD56.5-201ENST00000364281 72 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 CD24P4-201ENST00000382840 243 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 MIR515-2-201ENST00000384883 83 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 MIR515-1-201ENST00000384884 83 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 MIR517C-201ENST00000385103 95 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 AL354695.1-201ENST00000427935 228 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 RNY4P20-201ENST00000516678 93 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 AC024995.1-201ENST00000523014 93 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 AC084364.2-201ENST00000546924 395 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 AC021443.1-201ENST00000604478 211 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 AL353149.1-201ENST00000610667 244 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 AL035470.1-201ENST00000622571 220 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.96□□□□□ -2.1
COL3A1P02461 SNORA1B-201ENST00000362535 133 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 Y_RNA.37-201ENST00000362606 108 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 RNU1-133P-201ENST00000364867 167 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 snoU2-30.1-201ENST00000365012 70 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 Y_RNA.327-201ENST00000365201 102 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 RNU6-49P-201ENST00000384256 107 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 SNORA8-201ENST00000384574 139 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.95□□□□□ -2.1
COL3A1P02461 RNU1-131P-201ENST00000458943 161 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 RNU7-80P-201ENST00000459562 61 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 AC023141.11-201ENST00000508864 202 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 SNORA31.24-201ENST00000517232 57 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 MIR6895-201ENST00000613497 78 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 U6.108-201ENST00000637764 58 ntBASIC1.95□□□□□ -2.1
COL3A1P02461 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL3A1P02461 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.95□□□□□ -2.1
COL3A1P02461 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
COL3A1P02461 Y_RNA.298-201ENST00000364960 107 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 Y_RNA.351-201ENST00000365436 96 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 Y_RNA.388-201ENST00000383919 113 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 RNY1P6-201ENST00000384193 109 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 SRIP3-201ENST00000413200 219 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 ATP5J2P3-201ENST00000451550 258 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 RNU1-123P-201ENST00000458950 160 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 RNU7-164P-201ENST00000459221 62 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.94□□□□□ -2.1
COL3A1P02461 SUMO2P16-201ENST00000519475 264 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 MIR4762-201ENST00000585261 75 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 MIR376A2-201ENST00000636782 80 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
COL3A1P02461 RNU6-268P-201ENST00000364174 107 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 Y_RNA.336-201ENST00000365307 109 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 Y_RNA.547-201ENST00000384654 119 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 MIR590-201ENST00000385008 97 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 RNA5SP492-201ENST00000411330 114 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 AC087499.4-201ENST00000448505 178 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 AL163195.1-201ENST00000496941 348 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 RNU6-830P-201ENST00000516353 107 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 SNORD53B-201ENST00000577887 78 ntBASIC1.94□□□□□ -2.1
COL3A1P02461 AL596211.1-201ENST00000569873 2277 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 AC245060.5-201ENST00000610778 3293 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 Y_RNA.99-201ENST00000363138 105 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 SNORA63D-201ENST00000364359 132 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 Y_RNA.265-201ENST00000364677 108 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 RNU1-52P-201ENST00000384190 164 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 Y_RNA.454-201ENST00000384224 113 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 MTATP8P2-201ENST00000435212 202 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 UBBP3-201ENST00000445497 241 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 Z96811.1-201ENST00000445880 108 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.93□□□□□ -2.1
COL3A1P02461 RNU7-25P-201ENST00000516544 62 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 SNORD45.4-201ENST00000516629 73 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 RNA5SP102-201ENST00000516865 106 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 RNU6-667P-201ENST00000517186 102 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 MIR4421-201ENST00000578133 69 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 MIR3163-201ENST00000581592 73 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 AL442128.1-201ENST00000615151 90 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 MIR6779-201ENST00000617283 64 ntBASIC1.93□□□□□ -2.1
COL3A1P02461 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL3A1P02461 MIR302B-201ENST00000362188 73 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 Y_RNA.93-201ENST00000363066 109 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 SNORD114-26-201ENST00000363543 72 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 Y_RNA.191-201ENST00000363972 113 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 SNORD114-6-201ENST00000364393 72 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 RNU6-820P-201ENST00000384273 107 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 RNU6-160P-201ENST00000384591 107 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 SNORA67.6-201ENST00000391093 99 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 RNA5SP482-201ENST00000391269 118 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 RNU6-109P-201ENST00000516364 107 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 RNU6-184P-201ENST00000516514 107 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 RNU7-28P-201ENST00000516759 62 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 SNORA18.7-201ENST00000516910 131 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.92□□□□□ -2.1
COL3A1P02461 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.92□□□□□ -2.1
COL3A1P02461 Y_RNA.344-201ENST00000365381 112 ntBASIC1.91□□□□□ -2.1
COL3A1P02461 Y_RNA.440-201ENST00000384120 114 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms