Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNU6-659P-201ENST00000516454 104 ntBASIC1.43□□□□□ -2.18
LMX1BO60663 RNU6-1149P-201ENST00000516810 97 ntBASIC1.43□□□□□ -2.18
LMX1BO60663 MIR4299-201ENST00000577899 72 ntBASIC1.43□□□□□ -2.18
LMX1BO60663 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.43□□□□□ -2.18
LMX1BO60663 MIR539-201ENST00000365690 78 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 SNORD116-14-201ENST00000383894 92 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 SNORD116-17-201ENST00000383929 92 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 RNU6-80P-201ENST00000384195 107 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 SNORD116-15-201ENST00000384445 92 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 SNORD116-19-201ENST00000384729 92 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 RNA5SP212-201ENST00000391223 107 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 RNU2-51P-201ENST00000410708 197 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 AL158147.1-201ENST00000443970 75 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 RPL23AP6-201ENST00000446637 472 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 RNU7-107P-201ENST00000459121 61 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 Y_RNA.690-201ENST00000516603 95 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 MIR4255-201ENST00000579351 72 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 AC011603.4-201ENST00000611325 277 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 AC015726.2-201ENST00000620112 122 ntBASIC1.42□□□□□ -2.18
LMX1BO60663 Y_RNA.114-201ENST00000363265 113 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 RNA5SP205-201ENST00000364653 136 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 RNU6-1189P-201ENST00000383958 107 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 MIR516B2-201ENST00000385190 85 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 MIR802-201ENST00000390235 94 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 AC087499.4-201ENST00000448505 178 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 RNU7-95P-201ENST00000459222 64 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 RNU6-1333P-201ENST00000516162 93 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 IGKV1-22-201ENST00000524313 326 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 AP003484.1-201ENST00000530974 250 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.41□□□□□ -2.18
LMX1BO60663 SNORD53B-201ENST00000577887 78 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 SNORA77B-201ENST00000578179 125 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 AC108081.1-201ENST00000604358 221 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 AL022345.2-201ENST00000606307 135 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 BX248123.2-201ENST00000606318 124 ntBASIC1.41□□□□□ -2.18
LMX1BO60663 RNU6-235P-201ENST00000362644 107 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 Y_RNA.355-201ENST00000365462 98 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
LMX1BO60663 Y_RNA.617-201ENST00000410920 90 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 AC004965.1-201ENST00000413033 213 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 AC244636.1-201ENST00000421152 228 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.4□□□□□ -2.19
LMX1BO60663 RPS26P48-201ENST00000491713 339 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.4□□□□□ -2.19
LMX1BO60663 RNU6-62P-201ENST00000516526 102 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 Y_RNA.692-201ENST00000516627 105 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 RNU7-181P-201ENST00000517234 74 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 SNORD3E-202ENST00000627253 216 ntBASIC1.4□□□□□ -2.19
LMX1BO60663 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.39□□□□□ -2.19
LMX1BO60663 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
LMX1BO60663 SNORD38C-201ENST00000384381 69 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 Y_RNA.563-201ENST00000384707 108 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 MIR452-201ENST00000385020 85 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 SNORD28B-201ENST00000390993 75 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 RNU6-1154P-201ENST00000391001 104 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 U8.17-201ENST00000391292 132 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 Y_RNA.630-201ENST00000411370 108 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 AC008267.6-201ENST00000441664 139 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 AC009474.2-201ENST00000451383 136 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 RNU2-13P-201ENST00000515909 113 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 RNU6-917P-201ENST00000516294 104 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 AC103810.8-201ENST00000607347 118 ntBASIC1.39□□□□□ -2.19
LMX1BO60663 RNU6-1123P-201ENST00000362347 106 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 RNU6-1290P-201ENST00000362957 109 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 SNORA2.2-201ENST00000365473 135 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 MIR518E-201ENST00000385252 88 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 MIRLET7F2-201ENST00000385277 83 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 SNORA40.5-201ENST00000391061 128 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 RNU6-313P-201ENST00000516317 112 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 RNU6-781P-201ENST00000516377 101 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 Y_RNA.712-201ENST00000517011 92 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 SUMO2P16-201ENST00000519475 264 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 MIR548AR-201ENST00000582191 57 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 ICE2P2-201ENST00000483823 2787 ntBASIC1.38□□□□□ -2.19
LMX1BO60663 RNU6-349P-201ENST00000362402 107 ntBASIC1.37□□□□□ -2.19
LMX1BO60663 RNU6-1081P-201ENST00000384537 107 ntBASIC1.37□□□□□ -2.19
LMX1BO60663 MIR653-201ENST00000385279 96 ntBASIC1.37□□□□□ -2.19
LMX1BO60663 RNU6-735P-201ENST00000410612 107 ntBASIC1.37□□□□□ -2.19
LMX1BO60663 JTBP1-201ENST00000441314 247 ntBASIC1.37□□□□□ -2.19
LMX1BO60663 RNA5SP57-201ENST00000459463 123 ntBASIC1.37□□□□□ -2.19
LMX1BO60663 Y_RNA.757-201ENST00000578934 114 ntBASIC1.37□□□□□ -2.19
LMX1BO60663 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
LMX1BO60663 SNORD115-34-201ENST00000362441 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-12-201ENST00000362583 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-29-201ENST00000362834 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-9-201ENST00000362912 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-21-201ENST00000362963 81 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-14-201ENST00000363090 81 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 Y_RNA.116-201ENST00000363292 103 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-13-201ENST00000363358 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-41-201ENST00000363608 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-11-201ENST00000363616 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-5-201ENST00000363633 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-39-201ENST00000363694 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-4-201ENST00000363810 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-16-201ENST00000363887 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-6-201ENST00000363942 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-42-201ENST00000364273 82 ntBASIC1.36□□□□□ -2.19
LMX1BO60663 SNORD115-15-201ENST00000364809 81 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms