Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
TRIM38O00635 SNORA63.5-201ENST00000363548 123 ntBASIC1.95□□□□□ -2.1
TRIM38O00635 RNU6-414P-201ENST00000363705 104 ntBASIC1.95□□□□□ -2.1
TRIM38O00635 Y_RNA.253-201ENST00000364562 112 ntBASIC1.95□□□□□ -2.1
TRIM38O00635 MIR676-201ENST00000390702 67 ntBASIC1.95□□□□□ -2.1
TRIM38O00635 RN7SKP200-201ENST00000410564 320 ntBASIC1.95□□□□□ -2.1
TRIM38O00635 RNU6-126P-201ENST00000516685 103 ntBASIC1.95□□□□□ -2.1
TRIM38O00635 RNU6-94P-201ENST00000607728 107 ntBASIC1.95□□□□□ -2.1
TRIM38O00635 MIR8054-201ENST00000620877 86 ntBASIC1.95□□□□□ -2.1
TRIM38O00635 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.94□□□□□ -2.1
TRIM38O00635 Y_RNA.323-201ENST00000365157 109 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 MT-TI-201ENST00000387365 69 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 RNU6-440P-201ENST00000390882 105 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 SNORA19.1-201ENST00000410656 129 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 RNU6-240P-201ENST00000516098 97 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 RNU6-109P-201ENST00000516364 107 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 RNU6-184P-201ENST00000516514 107 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 RNU6-113P-201ENST00000516653 101 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 AP002004.2-201ENST00000531656 154 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 AC008507.4-201ENST00000585464 127 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 AP000942.3-201ENST00000603702 160 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 SNRPGP19-201ENST00000603826 189 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 AC062037.1-201ENST00000605302 128 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 MIR8074-201ENST00000615081 81 ntBASIC1.94□□□□□ -2.1
TRIM38O00635 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
TRIM38O00635 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
TRIM38O00635 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
TRIM38O00635 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.94□□□□□ -2.1
TRIM38O00635 SNORD24-201ENST00000383884 75 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 Y_RNA.558-201ENST00000384685 113 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 RNY1P7-201ENST00000384743 110 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 MIR518F-201ENST00000384973 87 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 MIR30A-201ENST00000385092 71 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 MIR1302-5-201ENST00000408164 150 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 RNA5SP489-201ENST00000410986 109 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 Y_RNA.621-201ENST00000411065 96 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 SNRPGP10-201ENST00000432323 225 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 JTBP1-201ENST00000441314 247 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 HMGN1P7-201ENST00000491722 313 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 RNU6-693P-201ENST00000516134 107 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 Y_RNA.676-201ENST00000516393 96 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 RNU6-1291P-201ENST00000516591 104 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 RNU7-28P-201ENST00000516759 62 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 SNORA28-201ENST00000606769 126 ntBASIC1.93□□□□□ -2.1
TRIM38O00635 SNORA4.2-201ENST00000365313 147 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 Y_RNA.362-201ENST00000365518 110 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 MIR590-201ENST00000385008 97 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
TRIM38O00635 AL445685.2-201ENST00000422551 342 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 RNU7-34P-201ENST00000459394 64 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 RNU6-830P-201ENST00000516353 107 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 SNORA40.13-201ENST00000516379 120 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 SNORA31.10-201ENST00000516482 106 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 MIR5089-201ENST00000580047 84 ntBASIC1.92□□□□□ -2.1
TRIM38O00635 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.92□□□□□ -2.1
TRIM38O00635 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
TRIM38O00635 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TRIM38O00635 Y_RNA.338-201ENST00000365320 114 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 RNU6-439P-201ENST00000384188 106 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 AL034345.1-201ENST00000407768 123 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 MIR1267-201ENST00000408723 78 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 SNRPGP13-201ENST00000442212 177 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 AC233266.1-201ENST00000454518 96 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 RNY4P20-201ENST00000516678 93 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 MIR5197-201ENST00000583721 112 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.91□□□□□ -2.1
TRIM38O00635 AC242852.1-201ENST00000612151 96 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 AC244015.1-201ENST00000622301 99 ntBASIC1.91□□□□□ -2.1
TRIM38O00635 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.1
TRIM38O00635 Y_RNA.198-201ENST00000364013 98 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 RNA5SP173-201ENST00000364857 136 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 RNU6-1031P-201ENST00000384773 107 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 RNU6-1275P-201ENST00000391087 107 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 AL161935.2-201ENST00000414627 60 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 AC003989.2-201ENST00000440224 169 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 RPS26P48-201ENST00000491713 339 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 AC008834.1-201ENST00000511612 175 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 AL589743.1-201ENST00000551932 2712 ntBASIC1.9□□□□□ -2.11
TRIM38O00635 Y_RNA.49-201ENST00000362714 112 ntBASIC1.89□□□□□ -2.11
TRIM38O00635 Y_RNA.267-201ENST00000364679 109 ntBASIC1.89□□□□□ -2.11
TRIM38O00635 Y_RNA.544-201ENST00000384650 113 ntBASIC1.89□□□□□ -2.11
TRIM38O00635 RNU6-592P-201ENST00000411333 103 ntBASIC1.89□□□□□ -2.11
TRIM38O00635 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.89□□□□□ -2.11
TRIM38O00635 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.89□□□□□ -2.11
TRIM38O00635 AC012493.3-201ENST00000604494 112 ntBASIC1.89□□□□□ -2.11
TRIM38O00635 AL442128.1-201ENST00000615151 90 ntBASIC1.89□□□□□ -2.11
TRIM38O00635 WWP1P1-201ENST00000466609 2769 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
TRIM38O00635 RNU6-1123P-201ENST00000362347 106 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 RNU6-349P-201ENST00000362402 107 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 SNORA1B-201ENST00000362535 133 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 Y_RNA.344-201ENST00000365381 112 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 RNU6-1104P-201ENST00000384723 104 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 SNORA17.3-201ENST00000391159 129 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 RNA5SP482-201ENST00000391269 118 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 AC099513.1-201ENST00000490423 301 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 RNU6-970P-201ENST00000516312 107 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 AC068339.1-201ENST00000526965 141 ntBASIC1.88□□□□□ -2.11
TRIM38O00635 MIR5009-201ENST00000578736 100 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms