Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 SNORA79-201ENST00000408376 140 ntBASIC2□□□□□ -2.09
NR2E3Q9Y5X4 JTBP1-201ENST00000441314 247 ntBASIC2□□□□□ -2.09
NR2E3Q9Y5X4 RNU1-123P-201ENST00000458950 160 ntBASIC2□□□□□ -2.09
NR2E3Q9Y5X4 CYCTP-201ENST00000504253 315 ntBASIC2□□□□□ -2.09
NR2E3Q9Y5X4 Y_RNA.666-201ENST00000516187 112 ntBASIC2□□□□□ -2.09
NR2E3Q9Y5X4 RNA5SP168-201ENST00000516642 112 ntBASIC2□□□□□ -2.09
NR2E3Q9Y5X4 AC027279.3-201ENST00000625055 122 ntBASIC2□□□□□ -2.09
NR2E3Q9Y5X4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-1123P-201ENST00000362347 106 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 Y_RNA.420-201ENST00000384043 110 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 SNORA1-201ENST00000384107 130 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 AL606753.1-201ENST00000427435 87 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 CALM2P4-201ENST00000430810 426 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 PGBD4P5-201ENST00000445958 426 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-1116P-201ENST00000517269 99 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 AL365205.2-201ENST00000594586 68 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 AL096840.1-201ENST00000603287 93 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 AC103810.8-201ENST00000607347 118 ntBASIC1.99□□□□□ -2.09
NR2E3Q9Y5X4 MIR424-201ENST00000362227 98 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-888P-201ENST00000363010 101 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 snoU2-30.1-201ENST00000365012 70 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 SNORD24-201ENST00000383884 75 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-439P-201ENST00000384188 106 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 Y_RNA.542-201ENST00000384641 111 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 MIR194-1-201ENST00000384892 85 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 MIR518F-201ENST00000384973 87 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 MIR676-201ENST00000390702 67 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 U8.16-201ENST00000391279 133 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 RNA5SP102-201ENST00000516865 106 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-365P-201ENST00000517113 106 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 RNU2-60P-201ENST00000517290 128 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 SNORD53B-201ENST00000577887 78 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 AC006441.5-201ENST00000612680 209 ntBASIC1.98□□□□□ -2.09
NR2E3Q9Y5X4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-1084P-201ENST00000362498 107 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-199P-201ENST00000362954 107 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-163P-201ENST00000384396 106 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 MIR660-201ENST00000385235 97 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 SNORD37.2-201ENST00000391075 66 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 MIR513C-201ENST00000401352 84 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 MIR1267-201ENST00000408723 78 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 AL161935.2-201ENST00000414627 60 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 HMGN2P32-201ENST00000444648 269 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 SNORD45.4-201ENST00000516629 73 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 RNU6-126P-201ENST00000516685 103 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 SNORA44.1-201ENST00000517031 108 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 MIR8074-201ENST00000615081 81 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 MIR376A2-201ENST00000636782 80 ntBASIC1.97□□□□□ -2.09
NR2E3Q9Y5X4 Y_RNA.36-201ENST00000362602 112 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-833P-201ENST00000363486 107 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-268P-201ENST00000364174 107 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-203P-201ENST00000384038 104 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-959P-201ENST00000384671 107 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 SNORA26-201ENST00000391286 122 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 MIR548I2-201ENST00000408348 149 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 RNA5SP489-201ENST00000410986 109 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 HMGN2P19-201ENST00000425149 265 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 MIR6515-201ENST00000619843 57 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 AP001340.1-201ENST00000624405 217 ntBASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.96□□□□□ -2.1
NR2E3Q9Y5X4 SNORA7.1-201ENST00000363750 139 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 SNORD14E-201ENST00000364009 85 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 Y_RNA.218-201ENST00000364218 104 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 SNORA25.7-201ENST00000364375 127 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 Y_RNA.336-201ENST00000365307 109 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 MIR891A-201ENST00000401237 79 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 AC114811.1-201ENST00000507207 168 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 RNU7-12P-201ENST00000516030 62 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-504P-201ENST00000516568 104 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-1270P-201ENST00000517128 108 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 SNORD3E-202ENST00000627253 216 ntBASIC1.95□□□□□ -2.1
NR2E3Q9Y5X4 SNORD114-22-201ENST00000365423 72 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 MIR30A-201ENST00000385092 71 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 MIR624-201ENST00000385217 97 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 SNORA40-201ENST00000388090 126 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 MIR802-201ENST00000390235 94 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 SNORD77.3-201ENST00000391113 65 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 SNRPGP13-201ENST00000442212 177 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 RPS29P11-201ENST00000496507 171 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 SNORA77B-201ENST00000578179 125 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 MIR3129-201ENST00000581095 76 ntBASIC1.94□□□□□ -2.1
NR2E3Q9Y5X4 U8.1-201ENST00000362843 134 ntBASIC1.93□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-508P-201ENST00000363231 103 ntBASIC1.93□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-442P-201ENST00000383968 104 ntBASIC1.93□□□□□ -2.1
NR2E3Q9Y5X4 AF228730.3-201ENST00000436691 102 ntBASIC1.93□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-693P-201ENST00000516134 107 ntBASIC1.93□□□□□ -2.1
NR2E3Q9Y5X4 RNU7-25P-201ENST00000516544 62 ntBASIC1.93□□□□□ -2.1
NR2E3Q9Y5X4 Y_RNA.686-201ENST00000516548 134 ntBASIC1.93□□□□□ -2.1
NR2E3Q9Y5X4 RNU6-971P-201ENST00000516920 106 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 230 ms