Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 DEFA7P-201ENST00000382676 285 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORA22-201ENST00000383907 134 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 MIR570-201ENST00000384917 97 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 AC107297.1-201ENST00000459991 176 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 RNU6-240P-201ENST00000516098 97 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORA31.25-201ENST00000517242 134 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 RNA5SP437-201ENST00000517249 129 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 IGLV3-17-201ENST00000519099 244 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 AC078899.2-201ENST00000595282 212 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 SNORD115-40-201ENST00000606510 82 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 MIR6132-201ENST00000622083 109 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
CCDC87Q9NVE4 Y_RNA.241-201ENST00000364470 117 ntBASIC2.76□□□□□ -1.97
CCDC87Q9NVE4 SNORA27-201ENST00000384323 126 ntBASIC2.76□□□□□ -1.97
CCDC87Q9NVE4 RNU7-34P-201ENST00000459394 64 ntBASIC2.76□□□□□ -1.97
CCDC87Q9NVE4 RNU6-412P-201ENST00000516434 106 ntBASIC2.76□□□□□ -1.97
CCDC87Q9NVE4 MIR6845-201ENST00000613182 61 ntBASIC2.76□□□□□ -1.97
CCDC87Q9NVE4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC87Q9NVE4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC87Q9NVE4 Y_RNA.35-201ENST00000362601 101 ntBASIC2.75□□□□□ -1.97
CCDC87Q9NVE4 MIR136-201ENST00000385207 82 ntBASIC2.75□□□□□ -1.97
CCDC87Q9NVE4 MIR1287-201ENST00000408492 90 ntBASIC2.75□□□□□ -1.97
CCDC87Q9NVE4 RNU7-96P-201ENST00000459535 64 ntBASIC2.75□□□□□ -1.97
CCDC87Q9NVE4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.75□□□□□ -1.97
CCDC87Q9NVE4 RNU7-193P-201ENST00000516723 65 ntBASIC2.75□□□□□ -1.97
CCDC87Q9NVE4 MIR548A1-201ENST00000385041 97 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 MIR759-201ENST00000390224 91 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 U8.17-201ENST00000391292 132 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 MIR1267-201ENST00000408723 78 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 RNA5SP450-201ENST00000411206 102 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 AL035398.1-201ENST00000430869 322 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 PGBD4P5-201ENST00000445958 426 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 AC021506.2-201ENST00000612354 169 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 AC091932.4-201ENST00000623386 200 ntBASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC87Q9NVE4 ICE2P2-201ENST00000483823 2787 ntBASIC2.73□□□□□ -1.97
CCDC87Q9NVE4 SNORA63.4-201ENST00000362763 126 ntBASIC2.73□□□□□ -1.97
CCDC87Q9NVE4 Y_RNA.198-201ENST00000364013 98 ntBASIC2.73□□□□□ -1.97
CCDC87Q9NVE4 MIR660-201ENST00000385235 97 ntBASIC2.73□□□□□ -1.97
CCDC87Q9NVE4 MIR524-201ENST00000385242 87 ntBASIC2.73□□□□□ -1.97
CCDC87Q9NVE4 RNU6-360P-201ENST00000390944 104 ntBASIC2.73□□□□□ -1.97
CCDC87Q9NVE4 AC021443.1-201ENST00000604478 211 ntBASIC2.73□□□□□ -1.97
CCDC87Q9NVE4 AL391516.1-201ENST00000554380 2449 ntBASIC2.73□□□□□ -1.97
CCDC87Q9NVE4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 MIR6073-201ENST00000352083 89 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 RNA5SP100-201ENST00000410903 110 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 RNA5SP59-201ENST00000410922 110 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 RPS29P24-201ENST00000486345 171 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 RNU6-998P-201ENST00000515894 101 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 MIR3683-201ENST00000580847 82 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 MIR4781-201ENST00000585250 76 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 AC245884.12-201ENST00000615364 59 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 AL596211.1-201ENST00000569873 2277 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 Z82195.2-201ENST00000612348 18351 ntBASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC87Q9NVE4 MIR424-201ENST00000362227 98 ntBASIC2.71□□□□□ -1.98
CCDC87Q9NVE4 Y_RNA.213-201ENST00000364178 111 ntBASIC2.71□□□□□ -1.98
CCDC87Q9NVE4 SNORA70.7-201ENST00000384159 133 ntBASIC2.71□□□□□ -1.98
CCDC87Q9NVE4 MIR583-201ENST00000384846 75 ntBASIC2.71□□□□□ -1.98
CCDC87Q9NVE4 SUMO1P4-201ENST00000429430 302 ntBASIC2.71□□□□□ -1.98
CCDC87Q9NVE4 AC090821.2-201ENST00000523552 176 ntBASIC2.71□□□□□ -1.98
CCDC87Q9NVE4 AC007012.1-201ENST00000567192 175 ntBASIC2.71□□□□□ -1.98
CCDC87Q9NVE4 ZNF355P-201ENST00000427301 3216 ntBASIC2.71□□□□□ -1.98
CCDC87Q9NVE4 RNY4P6-201ENST00000363667 96 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 Y_RNA.281-201ENST00000364774 94 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 SNORA48.3-201ENST00000391081 134 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 RNA5SP181-201ENST00000410246 98 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 AC099513.1-201ENST00000490423 301 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 MIR4679-2-201ENST00000578358 77 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 AL049779.4-201ENST00000604500 156 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 SNORD3E-202ENST00000627253 216 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 FO624990.1-201ENST00000636373 85 ntBASIC2.7□□□□□ -1.98
CCDC87Q9NVE4 MIR302B-201ENST00000362188 73 ntBASIC2.69□□□□□ -1.98
CCDC87Q9NVE4 Y_RNA.298-201ENST00000364960 107 ntBASIC2.69□□□□□ -1.98
CCDC87Q9NVE4 AC108667.1-201ENST00000428618 249 ntBASIC2.69□□□□□ -1.98
CCDC87Q9NVE4 RNY4P20-201ENST00000516678 93 ntBASIC2.69□□□□□ -1.98
CCDC87Q9NVE4 MIR5194-201ENST00000582634 120 ntBASIC2.69□□□□□ -1.98
CCDC87Q9NVE4 MIR4305-201ENST00000583252 102 ntBASIC2.69□□□□□ -1.98
CCDC87Q9NVE4 AC002984.1-201ENST00000591692 448 ntBASIC2.69□□□□□ -1.98
CCDC87Q9NVE4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
CCDC87Q9NVE4 AC019129.1-201ENST00000403786 261 ntBASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 RNU7-164P-201ENST00000459221 62 ntBASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 RNA5SP402-201ENST00000517148 110 ntBASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 RNU7-181P-201ENST00000517234 74 ntBASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 RNU2-19P-201ENST00000517288 84 ntBASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms