Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RNU6-531P-201ENST00000516694 104 ntBASIC-1.87□□□□□ -2.71
SCAPERQ9BY12 MTND4P7-201ENST00000523876 130 ntBASIC-1.87□□□□□ -2.71
SCAPERQ9BY12 SNORD77.3-201ENST00000391113 65 ntBASIC-1.88□□□□□ -2.71
SCAPERQ9BY12 snoU13.13-201ENST00000458842 104 ntBASIC-1.88□□□□□ -2.71
SCAPERQ9BY12 RNU7-74P-201ENST00000459104 62 ntBASIC-1.88□□□□□ -2.71
SCAPERQ9BY12 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.88□□□□□ -2.71
SCAPERQ9BY12 AC073534.2-201ENST00000620377 381 ntBASIC-1.88□□□□□ -2.71
SCAPERQ9BY12 RNU4-92P-201ENST00000363783 136 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 RNU1-141P-201ENST00000364623 158 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 SNORD74.6-201ENST00000364796 70 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 RNU6-157P-201ENST00000383957 107 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 RNU6-1323P-201ENST00000384025 107 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 RNU6-517P-201ENST00000384362 110 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 RNU7-180P-201ENST00000459240 63 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 RNU6-189P-201ENST00000516120 101 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 MIR5188-201ENST00000583467 113 ntBASIC-1.89□□□□□ -2.71
SCAPERQ9BY12 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 RNU6-601P-201ENST00000384540 107 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 MIR548I3-201ENST00000408378 149 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 RNU2-61P-201ENST00000411069 191 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 MTND3P23-201ENST00000431980 347 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 USP9YP23-201ENST00000455085 407 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 RNU7-55P-201ENST00000459426 62 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 RNU6-479P-201ENST00000516348 105 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 RNU7-116P-201ENST00000516940 62 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 MIR5692C1-201ENST00000585309 91 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 AC103705.1-201ENST00000619013 241 ntBASIC-1.9□□□□□ -2.71
SCAPERQ9BY12 Y_RNA.38-201ENST00000362617 102 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 SNORD24-201ENST00000383884 75 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 RNU6-790P-201ENST00000384479 105 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 MIR548O-201ENST00000408583 114 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 Y_RNA.598-201ENST00000410480 95 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 MIR3682-201ENST00000581338 84 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 POLR3GP2-201ENST00000588366 668 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 AC091931.1-201ENST00000623488 728 ntBASIC-1.91□□□□□ -2.71
SCAPERQ9BY12 RNU6-653P-201ENST00000363074 106 ntBASIC-1.91□□□□□ -2.72
SCAPERQ9BY12 MIR626-201ENST00000385032 94 ntBASIC-1.91□□□□□ -2.72
SCAPERQ9BY12 AL031003.1-201ENST00000404229 172 ntBASIC-1.91□□□□□ -2.72
SCAPERQ9BY12 MIR2681-201ENST00000581814 105 ntBASIC-1.91□□□□□ -2.72
SCAPERQ9BY12 AC245884.10-201ENST00000597355 337 ntBASIC-1.91□□□□□ -2.72
SCAPERQ9BY12 AC069503.3-201ENST00000618674 145 ntBASIC-1.91□□□□□ -2.72
SCAPERQ9BY12 AC006927.3-201ENST00000638789 384 ntBASIC-1.91□□□□□ -2.72
SCAPERQ9BY12 RNY4P34-201ENST00000364779 95 ntBASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 CYCSP46-201ENST00000423569 204 ntBASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 USMG5P1-201ENST00000425964 177 ntBASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 CEP57L1P1-201ENST00000430943 1201 ntBASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 CHEK2P4-201ENST00000450340 246 ntBASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 CCDC34P1-201ENST00000507441 517 ntBASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 MIR6717-201ENST00000622747 73 ntBASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-1.92□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.151-201ENST00000363566 112 ntBASIC-1.93□□□□□ -2.72
SCAPERQ9BY12 RNU6-82P-201ENST00000363970 107 ntBASIC-1.93□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.352-201ENST00000365439 102 ntBASIC-1.93□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.93□□□□□ -2.72
SCAPERQ9BY12 RNU6-880P-201ENST00000384526 107 ntBASIC-1.93□□□□□ -2.72
SCAPERQ9BY12 AC016907.1-201ENST00000419483 435 ntBASIC-1.93□□□□□ -2.72
SCAPERQ9BY12 EIF1P2-201ENST00000428233 350 ntBASIC-1.93□□□□□ -2.72
SCAPERQ9BY12 MIR5696-201ENST00000578474 85 ntBASIC-1.93□□□□□ -2.72
SCAPERQ9BY12 RNY1P16-201ENST00000363063 111 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.221-201ENST00000364248 96 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.405-201ENST00000383979 100 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.451-201ENST00000384200 100 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.524-201ENST00000384564 100 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.561-201ENST00000384694 100 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 YWHAEP2-201ENST00000580066 112 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 AC022441.3-201ENST00000605737 136 ntBASIC-1.94□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 SNORD115-28-201ENST00000363931 81 ntBASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 RNU4-68P-201ENST00000364314 141 ntBASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 RNU6-1200P-201ENST00000384162 107 ntBASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 RNU6-154P-201ENST00000384306 106 ntBASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 RNU2-9P-201ENST00000410194 145 ntBASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 TPTE2P5-203ENST00000458118 728 ntBASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 RNU6-287P-201ENST00000516230 98 ntBASIC-1.95□□□□□ -2.72
SCAPERQ9BY12 MIR20A-201ENST00000362279 71 ntBASIC-1.96□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.96□□□□□ -2.72
SCAPERQ9BY12 SNORA26.6-201ENST00000391256 115 ntBASIC-1.96□□□□□ -2.72
SCAPERQ9BY12 RNU5E-9P-201ENST00000411164 104 ntBASIC-1.96□□□□□ -2.72
SCAPERQ9BY12 MTND3P21-201ENST00000433774 331 ntBASIC-1.96□□□□□ -2.72
SCAPERQ9BY12 AL356010.1-201ENST00000456364 102 ntBASIC-1.96□□□□□ -2.72
SCAPERQ9BY12 MIR4520-1-201ENST00000582609 70 ntBASIC-1.96□□□□□ -2.72
SCAPERQ9BY12 AC009161.2-201ENST00000624626 138 ntBASIC-1.96□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.97□□□□□ -2.72
SCAPERQ9BY12 SNORD113-7-201ENST00000363762 77 ntBASIC-1.97□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.97□□□□□ -2.72
SCAPERQ9BY12 RNU6-597P-201ENST00000365620 102 ntBASIC-1.97□□□□□ -2.72
SCAPERQ9BY12 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.97□□□□□ -2.72
SCAPERQ9BY12 RNU6-195P-201ENST00000411352 109 ntBASIC-1.97□□□□□ -2.72
SCAPERQ9BY12 PCMTD1P1-201ENST00000455560 355 ntBASIC-1.97□□□□□ -2.72
SCAPERQ9BY12 RNU7-96P-201ENST00000459535 64 ntBASIC-1.97□□□□□ -2.72
SCAPERQ9BY12 SERF1AP1-201ENST00000514575 187 ntBASIC-1.97□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms