Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-728P-201ENST00000365375 104 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 SNORA70.7-201ENST00000384159 133 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 Y_RNA.494-201ENST00000384432 111 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 MIR570-201ENST00000384917 97 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 MIR136-201ENST00000385207 82 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 AL451046.2-201ENST00000403074 277 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 RNU2-70P-201ENST00000410718 179 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 RNU5E-9P-201ENST00000411164 104 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 AC108059.2-201ENST00000434626 151 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.16□□□□□ -2.22
USP28Q96RU2 SNORD123-201ENST00000459473 70 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 SNORA81.3-201ENST00000517283 198 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 MIR3664-201ENST00000579074 99 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 AL096861.1-201ENST00000610899 123 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 RNA5SP327-201ENST00000362494 101 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 Y_RNA.75-201ENST00000362927 97 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 RNU4-38P-201ENST00000364472 129 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 Y_RNA.435-201ENST00000384095 112 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 SNORA1-201ENST00000384107 130 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 SNORD38C-201ENST00000384381 69 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 RNU6-847P-201ENST00000411115 108 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 MRPL35P3-201ENST00000421557 364 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 OR2A41P-201ENST00000473586 105 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 RNU6-693P-201ENST00000516134 107 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 RNU6-197P-201ENST00000516680 100 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 RNU6-365P-201ENST00000517113 106 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 RNU6-794P-201ENST00000517261 64 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 MIR4662B-201ENST00000579498 81 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 MIR548AR-201ENST00000582191 57 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 MIR3192-201ENST00000584920 77 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 AC097639.2-201ENST00000603159 172 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 AL513534.2-201ENST00000603836 250 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 AC004792.1-201ENST00000614523 137 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 MIR376A2-201ENST00000636782 80 ntBASIC1.15□□□□□ -2.23
USP28Q96RU2 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.23
USP28Q96RU2 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
USP28Q96RU2 RNU6-1336P-201ENST00000383886 109 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
USP28Q96RU2 U8.17-201ENST00000391292 132 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 RNU4-43P-201ENST00000410628 137 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 RNU2-55P-201ENST00000411146 174 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 RNU6-938P-201ENST00000411285 103 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 SEPT7P4-201ENST00000437076 306 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 AL138752.1-201ENST00000452964 351 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 AL133373.1-201ENST00000497098 94 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.14□□□□□ -2.23
USP28Q96RU2 RNU7-41P-201ENST00000515917 61 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 RNA5SP458-201ENST00000516188 119 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 RNU6-947P-201ENST00000516264 106 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 SNORD111.1-201ENST00000516421 86 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 SNORA74.3-201ENST00000517108 154 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.14□□□□□ -2.23
USP28Q96RU2 MIR4295-201ENST00000585286 85 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 AC103810.9-201ENST00000606688 112 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 GHRLOS.1-201ENST00000610995 70 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 MIR6078-201ENST00000611069 100 ntBASIC1.14□□□□□ -2.23
USP28Q96RU2 Y_RNA.29-201ENST00000362570 113 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 RNU6-888P-201ENST00000363010 101 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 SNORA22-201ENST00000383907 134 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 RNU6-643P-201ENST00000384018 107 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 Y_RNA.785-201ENST00000384290 109 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 SNORA22C-201ENST00000384614 134 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.13□□□□□ -2.23
USP28Q96RU2 AF228730.3-201ENST00000436691 102 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 RNU7-120P-201ENST00000459334 63 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 RNU6-830P-201ENST00000516353 107 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 RNA5SP153-201ENST00000516498 76 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 SNORD36C-201ENST00000516733 66 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 RN7SKP88-201ENST00000516847 250 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 MRPS18CP4-201ENST00000535821 231 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 7SK.8-201ENST00000612110 250 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 7SK.11-201ENST00000615477 250 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 7SK.13-201ENST00000622040 250 ntBASIC1.13□□□□□ -2.23
USP28Q96RU2 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.12□□□□□ -2.23
USP28Q96RU2 Y_RNA.150-201ENST00000363562 102 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 SNORD115-28-201ENST00000363931 81 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 RNU6-978P-201ENST00000364371 103 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 RNU6-907P-201ENST00000390924 102 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.12□□□□□ -2.23
USP28Q96RU2 AC006461.1-201ENST00000412637 326 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 RNU6-322P-201ENST00000516010 103 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 MIR4764-201ENST00000580680 88 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 MIR3129-201ENST00000581095 76 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 AC072026.1-201ENST00000605023 201 ntBASIC1.12□□□□□ -2.23
USP28Q96RU2 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.11□□□□□ -2.23
USP28Q96RU2 Y_RNA.37-201ENST00000362606 108 ntBASIC1.11□□□□□ -2.23
USP28Q96RU2 SNORD24-201ENST00000383884 75 ntBASIC1.11□□□□□ -2.23
USP28Q96RU2 AC087343.1-201ENST00000477341 475 ntBASIC1.11□□□□□ -2.23
USP28Q96RU2 RNU6-504P-201ENST00000516568 104 ntBASIC1.11□□□□□ -2.23
USP28Q96RU2 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.11□□□□□ -2.23
USP28Q96RU2 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
USP28Q96RU2 Y_RNA.240-201ENST00000364469 95 ntBASIC1.1□□□□□ -2.23
USP28Q96RU2 MIR520C-201ENST00000385005 87 ntBASIC1.1□□□□□ -2.23
USP28Q96RU2 SNORD77.3-201ENST00000391113 65 ntBASIC1.1□□□□□ -2.23
USP28Q96RU2 PCNPP3-201ENST00000393579 471 ntBASIC1.1□□□□□ -2.23
USP28Q96RU2 AC048334.1-201ENST00000477975 159 ntBASIC1.1□□□□□ -2.23
USP28Q96RU2 Y_RNA.700-201ENST00000516806 100 ntBASIC1.1□□□□□ -2.23
USP28Q96RU2 MIR4431-201ENST00000579990 94 ntBASIC1.1□□□□□ -2.23
USP28Q96RU2 MIR378D2-201ENST00000580636 98 ntBASIC1.1□□□□□ -2.23
USP28Q96RU2 SNORA25.3-201ENST00000363205 127 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms