Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CLIP3Q96DZ5 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 MIR21-201ENST00000362134 72 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.37-201ENST00000362606 108 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 SNORD73B-201ENST00000364394 72 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.362-201ENST00000365518 110 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 SNORA51.5-201ENST00000384126 131 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.547-201ENST00000384654 119 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 RN7SKP223-201ENST00000410582 62 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 snoU13.27-201ENST00000459278 104 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 RPL39P34-201ENST00000477141 156 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 RNU6-830P-201ENST00000516353 107 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 AC067747.1-201ENST00000608026 250 ntBASIC2.19□□□□□ -2.06
CLIP3Q96DZ5 SNORA63.5-201ENST00000363548 123 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 SNORA4.2-201ENST00000365313 147 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 SNORA2.2-201ENST00000365473 135 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 RNU6-1189P-201ENST00000383958 107 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 RNU6-49P-201ENST00000384256 107 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 RNU6-440P-201ENST00000390882 105 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 MIR1302-5-201ENST00000408164 150 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 RN7SKP200-201ENST00000410564 320 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 SNORD36C-201ENST00000516733 66 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.714-201ENST00000517065 90 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 MIR1273D-201ENST00000577266 86 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 MIR4648-201ENST00000580107 72 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 MIR3124-201ENST00000582636 67 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 AL096840.1-201ENST00000603287 93 ntBASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
CLIP3Q96DZ5 RNU6-661P-201ENST00000362409 107 ntBASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 SNORD68-201ENST00000363214 84 ntBASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 SNORD115-28-201ENST00000363931 81 ntBASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.440-201ENST00000384120 114 ntBASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 RNU6-844P-201ENST00000517175 102 ntBASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 MIR4709-201ENST00000577272 72 ntBASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 MIR5007-201ENST00000583098 95 ntBASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 AL359851.1-201ENST00000569460 4997 ntBASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
CLIP3Q96DZ5 AL442644.1-201ENST00000454390 3105 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.49-201ENST00000362714 112 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 RNU6-1131P-201ENST00000364955 107 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 Y_RNA.298-201ENST00000364960 107 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 MIR488-201ENST00000365739 83 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 RNU6-442P-201ENST00000383968 104 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 RNU6-1104P-201ENST00000384723 104 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 RNA5SP338-201ENST00000410495 85 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 snoU13.26-201ENST00000459452 105 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 SNORA31.10-201ENST00000516482 106 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
CLIP3Q96DZ5 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
CLIP3Q96DZ5 AL589743.1-201ENST00000551932 2712 ntBASIC2.15□□□□□ -2.06
CLIP3Q96DZ5 RNY4P6-201ENST00000363667 96 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 SNORD14E-201ENST00000364009 85 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 RNU6-690P-201ENST00000365242 106 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.344-201ENST00000365381 112 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 SNORA19.1-201ENST00000410656 129 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 HMGN2P19-201ENST00000425149 265 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 RNU7-34P-201ENST00000459394 64 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 RPL23AP42-201ENST00000471152 471 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 SNORD45.4-201ENST00000516629 73 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 MIR5009-201ENST00000578736 100 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 SNORA28-201ENST00000606769 126 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 uc_338.20-201ENST00000621563 178 ntBASIC2.15□□□□□ -2.07
CLIP3Q96DZ5 RNU6-414P-201ENST00000363705 104 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 RNU6-294P-201ENST00000364999 102 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 RNY1P6-201ENST00000384193 109 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 MIR590-201ENST00000385008 97 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 MIR221-201ENST00000385135 110 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 AL445646.1-201ENST00000431784 216 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 SNORA31.4-201ENST00000516049 129 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 RNU6-109P-201ENST00000516364 107 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 RNU6-184P-201ENST00000516514 107 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 SCARNA16.3-201ENST00000516595 184 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 RNU7-28P-201ENST00000516759 62 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 SUMO2P16-201ENST00000519475 264 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 AC024614.2-201ENST00000577584 372 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 AC021443.1-201ENST00000604478 211 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 AC103810.8-201ENST00000607347 118 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 MIR6766-201ENST00000622641 72 ntBASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CLIP3Q96DZ5 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.213-201ENST00000364178 111 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 snoU2-30.1-201ENST00000365012 70 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 Y_RNA.388-201ENST00000383919 113 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 RNU6-1031P-201ENST00000384773 107 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 MIR676-201ENST00000390702 67 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 AL034345.1-201ENST00000407768 123 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 RNU7-123P-201ENST00000515911 60 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 SNORA40.13-201ENST00000516379 120 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 RNU6-762P-201ENST00000517107 102 ntBASIC2.13□□□□□ -2.07
CLIP3Q96DZ5 IGKV3-31-201ENST00000523109 329 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 170.6 ms