Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC104850.1-201ENST00000435940 476 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 SNORA25.16-201ENST00000516741 121 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-1.08□□□□□ -2.58
USF3Q68DE3 MIR3674-201ENST00000636576 68 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 RNU4-75P-201ENST00000364621 146 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 SNORD12C-201ENST00000386307 89 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 RNU6-913P-201ENST00000390913 95 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC-1.09□□□□□ -2.58
USF3Q68DE3 RNU6-625P-201ENST00000459412 107 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 AP002963.1-201ENST00000530590 184 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-1.09□□□□□ -2.58
USF3Q68DE3 AL442663.2-201ENST00000554385 511 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 AC008507.4-201ENST00000585464 127 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 MIR539-201ENST00000365690 78 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 Y_RNA.490-201ENST00000384413 102 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 RNU4-70P-201ENST00000384579 139 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 AL031003.1-201ENST00000404229 172 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 AL603910.2-201ENST00000407268 136 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 RNU6-195P-201ENST00000411352 109 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 RNU7-187P-201ENST00000458985 68 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 AC004223.4-201ENST00000612426 332 ntBASIC-1.09□□□□□ -2.58
USF3Q68DE3 RNU6-501P-201ENST00000364072 100 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 Y_RNA.428-201ENST00000384078 102 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 AC009961.2-201ENST00000435771 251 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 TPTE2P5-203ENST00000458118 728 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 SNORA40.9-201ENST00000515895 93 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 RNU7-175P-201ENST00000515915 61 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 RNU7-149P-201ENST00000516739 59 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 MIR3682-201ENST00000581338 84 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 AP003357.1-201ENST00000604497 148 ntBASIC-1.1□□□□□ -2.59
USF3Q68DE3 Y_RNA.159-201ENST00000363674 87 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 RNU1-141P-201ENST00000364623 158 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 RNU6-597P-201ENST00000365620 102 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 RNU6-601P-201ENST00000384540 107 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 MIR527-201ENST00000385244 85 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 MIR548K-201ENST00000408406 116 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 MIR548O-201ENST00000408583 114 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 Y_RNA.598-201ENST00000410480 95 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 RNA5SP484-201ENST00000458857 111 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 RNU7-96P-201ENST00000459535 64 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 RNU6-479P-201ENST00000516348 105 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 MTND5P40-201ENST00000559945 246 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 Y_RNA.241-201ENST00000364470 117 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 RNU6-436P-201ENST00000516171 114 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 MIR548H5-201ENST00000580314 60 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 AC245884.10-201ENST00000597355 337 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 AC022140.2-201ENST00000623500 188 ntBASIC-1.11□□□□□ -2.59
USF3Q68DE3 SNORD50.1-201ENST00000362987 71 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 Y_RNA.263-201ENST00000364659 114 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 Y_RNA.323-201ENST00000365157 109 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 RNU6-1264P-201ENST00000383891 107 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 MIR626-201ENST00000385032 94 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 AC007494.3-201ENST00000624660 743 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 U6.109-201ENST00000636749 87 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 SNORD115-28-201ENST00000363931 81 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 SNORA72.3-201ENST00000365074 132 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 RNU6-214P-201ENST00000384130 107 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 RNU6-74P-201ENST00000384235 107 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 SNORD77.3-201ENST00000391113 65 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 MIR889-201ENST00000401280 79 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 AL606923.1-201ENST00000406616 190 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 RNU6-938P-201ENST00000411285 103 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 SNORD11-201ENST00000459124 84 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 MTCO1P29-201ENST00000496868 288 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 MIR5704-201ENST00000584029 77 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 AC087683.2-201ENST00000611384 326 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 AC103705.1-201ENST00000619013 241 ntBASIC-1.12□□□□□ -2.59
USF3Q68DE3 AL589826.1-201ENST00000340697 249 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNY3P9-201ENST00000384727 106 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 SNORA49-201ENST00000386157 136 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 MIR8485-201ENST00000401372 91 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNA5SP261-201ENST00000410536 106 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNU6-1203P-201ENST00000410703 110 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNU2-61P-201ENST00000411069 191 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNU7-134P-201ENST00000458997 64 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNU7-74P-201ENST00000459104 62 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNU6-693P-201ENST00000516134 107 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 AC245014.2-201ENST00000603689 287 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 MIR8068-201ENST00000618032 68 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 AL607023.1-201ENST00000620045 248 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNU4-80P-201ENST00000363200 141 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 RNU6-1190P-201ENST00000410811 104 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 Y_RNA.706-201ENST00000516933 99 ntBASIC-1.13□□□□□ -2.59
USF3Q68DE3 Y_RNA.533-201ENST00000384596 114 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 MIR548A2-201ENST00000384956 97 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 RNU6-192P-201ENST00000391253 100 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 RNU6-1001P-201ENST00000411265 100 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 AC022028.1-201ENST00000412054 408 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 CYCSP46-201ENST00000423569 204 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-1.14□□□□□ -2.59
USF3Q68DE3 RNU6-1170P-201ENST00000515974 106 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 AC145350.1-201ENST00000567426 208 ntBASIC-1.14□□□□□ -2.59
USF3Q68DE3 Y_RNA.37-201ENST00000362606 108 ntBASIC-1.15□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms