Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 MIR655-201ENST00000362159 97 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 MIR1278-201ENST00000408753 81 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 RNU4-55P-201ENST00000410731 137 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 RNU6-1001P-201ENST00000411265 100 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 EIF1P2-201ENST00000428233 350 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AP003733.2-201ENST00000529409 171 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AP001542.1-201ENST00000591314 200 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 RNU6-553P-201ENST00000364047 96 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 RNU4-66P-201ENST00000365199 138 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AC244505.6-201ENST00000452829 130 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 RNU6-1007P-201ENST00000516586 107 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 SNORA25.16-201ENST00000516741 121 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AC007012.1-201ENST00000567192 175 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AC245884.10-201ENST00000597355 337 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AL391834.2-201ENST00000609982 546 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AL512506.1-201ENST00000613918 449 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 AC099654.13-201ENST00000639774 207 ntBASIC-0.69□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.263-201ENST00000364659 114 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.511-201ENST00000384514 103 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 RNU7-104P-201ENST00000459398 79 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 SNORA25.10-201ENST00000515926 124 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 AC019193.3-201ENST00000609144 554 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 MIR8055-201ENST00000610739 97 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 MIR3674-201ENST00000636576 68 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 RNU6-1309P-201ENST00000363305 108 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 RNU6-1257P-201ENST00000384625 110 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 MIR626-201ENST00000385032 94 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 MTND1P11-201ENST00000456661 876 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 RNU7-141P-201ENST00000459304 62 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 SNORA25.13-201ENST00000516395 103 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 MIR2681-201ENST00000581814 105 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 AC008507.4-201ENST00000585464 127 ntBASIC-0.7□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.97-201ENST00000363094 102 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 AL080274.1-201ENST00000605565 220 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 AC126544.2-201ENST00000625174 749 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 RNU2-9P-201ENST00000410194 145 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 MIR3682-201ENST00000581338 84 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 AC027449.1-201ENST00000608890 407 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 MIR6854-201ENST00000614935 69 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 RNU6-82P-201ENST00000363970 107 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 RNU4-75P-201ENST00000364621 146 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 RNU6-1208P-201ENST00000459588 107 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 RNU7-25P-201ENST00000516544 62 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 SNORD38.3-201ENST00000516599 73 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 MIR548H5-201ENST00000580314 60 ntBASIC-0.71□□□□□ -2.52
CHD9Q3L8U1 RNY3P11-201ENST00000364153 102 ntBASIC-0.72□□□□□ -2.52
CHD9Q3L8U1 MIR9-2-201ENST00000384838 87 ntBASIC-0.72□□□□□ -2.52
CHD9Q3L8U1 SNORA40.5-201ENST00000391061 128 ntBASIC-0.72□□□□□ -2.52
CHD9Q3L8U1 PCMTD1P1-201ENST00000455560 355 ntBASIC-0.72□□□□□ -2.52
CHD9Q3L8U1 RNU6-189P-201ENST00000516120 101 ntBASIC-0.72□□□□□ -2.52
CHD9Q3L8U1 AC091144.1-201ENST00000519573 138 ntBASIC-0.72□□□□□ -2.52
CHD9Q3L8U1 AP003461.1-201ENST00000528866 78 ntBASIC-0.72□□□□□ -2.52
CHD9Q3L8U1 RNU6-1145P-201ENST00000384246 107 ntBASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 RNA5SP237-201ENST00000410414 113 ntBASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 AL033528.1-201ENST00000453780 140 ntBASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 AL133215.3-201ENST00000609801 448 ntBASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 AC109347.2-201ENST00000610220 349 ntBASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 TUSC7.1-201ENST00000610969 165 ntBASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 AP001282.2-201ENST00000616149 309 ntBASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.72□□□□□ -2.53
CHD9Q3L8U1 RNU6-454P-201ENST00000364292 107 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.396-201ENST00000383949 103 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.456-201ENST00000384232 111 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 MTCO2P27-201ENST00000420740 428 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 AC084290.1-201ENST00000434995 374 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 SNORD18.2-201ENST00000459604 70 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 RNA5SP401-201ENST00000515920 127 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 SNORD22.1-201ENST00000516331 125 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.706-201ENST00000516933 99 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 MIR5696-201ENST00000578474 85 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 RNU7-10P-201ENST00000607194 63 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 AC011373.1-201ENST00000607270 237 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 RNU4-92P-201ENST00000363783 136 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 MIR599-201ENST00000385069 95 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 SNORD72-201ENST00000390994 80 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 RNU6-1242P-201ENST00000391052 103 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 RNU6-192P-201ENST00000391253 100 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 SNORA36B-201ENST00000410438 131 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 RNU7-13P-201ENST00000516413 62 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 SCOCP1-201ENST00000554676 349 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 AP002371.2-201ENST00000624450 503 ntBASIC-0.73□□□□□ -2.53
CHD9Q3L8U1 SNORD50.1-201ENST00000362987 71 ntBASIC-0.74□□□□□ -2.53
CHD9Q3L8U1 MTCO3P40-201ENST00000392516 676 ntBASIC-0.74□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 186.8 ms