Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 RNU6-436P-201ENST00000516171 114 ntBASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 AC127455.1-201ENST00000565496 145 ntBASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 AC140658.3-201ENST00000567603 271 ntBASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 MIR4473-201ENST00000583731 91 ntBASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 AC019193.3-201ENST00000609144 554 ntBASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 AC091931.1-201ENST00000623488 728 ntBASIC-1.61□□□□□ -2.67
HIST1H1AQ02539 Y_RNA.101-201ENST00000363154 102 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 RNU4-58P-201ENST00000363192 141 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 Y_RNA.364-201ENST00000365532 101 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 Y_RNA.439-201ENST00000384119 94 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 RNU6-1158P-201ENST00000391167 107 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 SNORD11-201ENST00000459124 84 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 MIR4509-3-201ENST00000578671 94 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 MIR4509-2-201ENST00000583920 94 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 MIR4509-1-201ENST00000618224 94 ntBASIC-1.62□□□□□ -2.67
HIST1H1AQ02539 MIR626-201ENST00000385032 94 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 MIR190B-201ENST00000401119 79 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 RNU6-1203P-201ENST00000410703 110 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 RNU7-96P-201ENST00000459535 64 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 RNU6-408P-201ENST00000515910 100 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 RNA5SP401-201ENST00000515920 127 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 MIR4273-201ENST00000582824 84 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 AC124303.1-201ENST00000605703 360 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 MTND5P18-201ENST00000445624 1801 ntBASIC-1.63□□□□□ -2.67
HIST1H1AQ02539 Y_RNA.7-201ENST00000362352 102 ntBASIC-1.64□□□□□ -2.67
HIST1H1AQ02539 Y_RNA.37-201ENST00000362606 108 ntBASIC-1.64□□□□□ -2.67
HIST1H1AQ02539 AL603914.1-201ENST00000401964 204 ntBASIC-1.64□□□□□ -2.67
HIST1H1AQ02539 SNORD57-201ENST00000448188 72 ntBASIC-1.64□□□□□ -2.67
HIST1H1AQ02539 SNORD42A-201ENST00000459584 64 ntBASIC-1.64□□□□□ -2.67
HIST1H1AQ02539 RNU6-998P-201ENST00000515894 101 ntBASIC-1.64□□□□□ -2.67
HIST1H1AQ02539 RNU6-254P-201ENST00000363377 107 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 RNU4-50P-201ENST00000364361 141 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 Y_RNA.310-201ENST00000365063 113 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 RNU4-20P-201ENST00000365601 151 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 MIR539-201ENST00000365690 78 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 AC074085.1-201ENST00000413598 418 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 FCF1P4-201ENST00000448326 183 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 MIR3179-1-201ENST00000578940 84 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 MIR3179-2-201ENST00000579107 84 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 MIR3179-3-201ENST00000579566 84 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 MIR3179-4-201ENST00000617599 84 ntBASIC-1.65□□□□□ -2.67
HIST1H1AQ02539 SNORD12B-201ENST00000410433 91 ntBASIC-1.66□□□□□ -2.68
HIST1H1AQ02539 RNU6-248P-201ENST00000410720 107 ntBASIC-1.66□□□□□ -2.68
HIST1H1AQ02539 SCARNA18B-201ENST00000458806 135 ntBASIC-1.66□□□□□ -2.68
HIST1H1AQ02539 RNU7-87P-201ENST00000459343 62 ntBASIC-1.66□□□□□ -2.68
HIST1H1AQ02539 RNU7-115P-201ENST00000516433 55 ntBASIC-1.66□□□□□ -2.68
HIST1H1AQ02539 AC060780.3-201ENST00000589464 80 ntBASIC-1.66□□□□□ -2.68
HIST1H1AQ02539 AC007494.3-201ENST00000624660 743 ntBASIC-1.66□□□□□ -2.68
HIST1H1AQ02539 RNU4-32P-201ENST00000363404 141 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 Y_RNA.221-201ENST00000364248 96 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 RNU1-141P-201ENST00000364623 158 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 SNORA72.3-201ENST00000365074 132 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 Y_RNA.341-201ENST00000365341 102 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 SNORD115-44-201ENST00000365391 82 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 RNU6-596P-201ENST00000365395 98 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 RNA5SP261-201ENST00000410536 106 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 MTND3P7-201ENST00000474435 343 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 SNORD36C-201ENST00000516733 66 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 MIR3115-201ENST00000577915 68 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 AC022441.3-201ENST00000605737 136 ntBASIC-1.67□□□□□ -2.68
HIST1H1AQ02539 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 RNU6-961P-201ENST00000363893 105 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 MIR517B-201ENST00000385102 67 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 MIR518B-201ENST00000385127 83 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 RNU6-710P-201ENST00000410424 105 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 RNU7-45P-201ENST00000459460 63 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 MIR3913-1-201ENST00000577744 102 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 AC004223.4-201ENST00000612426 332 ntBASIC-1.68□□□□□ -2.68
HIST1H1AQ02539 RNY1P13-201ENST00000365030 105 ntBASIC-1.69□□□□□ -2.68
HIST1H1AQ02539 AP003461.1-201ENST00000528866 78 ntBASIC-1.69□□□□□ -2.68
HIST1H1AQ02539 AC040926.1-201ENST00000530195 238 ntBASIC-1.69□□□□□ -2.68
HIST1H1AQ02539 AP000676.1-201ENST00000533307 52 ntBASIC-1.69□□□□□ -2.68
HIST1H1AQ02539 AC087752.4-201ENST00000605911 462 ntBASIC-1.69□□□□□ -2.68
HIST1H1AQ02539 AC122108.2-201ENST00000611946 526 ntBASIC-1.69□□□□□ -2.68
HIST1H1AQ02539 MIR548AY-201ENST00000617669 107 ntBASIC-1.69□□□□□ -2.68
HIST1H1AQ02539 MIR4320-201ENST00000636981 65 ntBASIC-1.69□□□□□ -2.68
HIST1H1AQ02539 Y_RNA.381-201ENST00000365666 102 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 SNORD116-9-201ENST00000384000 95 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 SNORD116-3-201ENST00000384287 95 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 SNORD116-8-201ENST00000384365 95 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 SNORD116-7-201ENST00000384404 95 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 SNORD116-5-201ENST00000384462 95 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 MT-TY-201ENST00000387409 66 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 RNA5SP266-201ENST00000410273 108 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 AC083904.1-201ENST00000487828 231 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 RNU6-155P-201ENST00000516347 100 ntBASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-1.7□□□□□ -2.68
HIST1H1AQ02539 MIR4306-201ENST00000583390 91 ntBASIC-1.7□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms