Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SNORA63.5-201ENST00000363548 123 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RNU6-690P-201ENST00000365242 106 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RNY4P30-201ENST00000410216 95 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 HMGN1P33-201ENST00000432945 451 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 AC087499.4-201ENST00000448505 178 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 AC006483.1-201ENST00000487308 313 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 Y_RNA.677-201ENST00000516401 85 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 AC084364.2-201ENST00000546924 395 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 MIR4778-201ENST00000577635 80 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 AL589743.1-201ENST00000551932 2712 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 RNU1-58P-201ENST00000362413 163 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 SNORD115-3-201ENST00000363100 82 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 RNU6-1019P-201ENST00000364424 107 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 U8.5-201ENST00000364528 136 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 SNORD12C-201ENST00000386307 89 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 RNU7-80P-201ENST00000459562 61 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 AP003484.1-201ENST00000530974 250 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.05□□□□□ -2.08
COL4A3Q01955 MIR5582-201ENST00000579697 68 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 MIR8054-201ENST00000620877 86 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 MIR6734-201ENST00000621166 68 ntBASIC2.05□□□□□ -2.08
COL4A3Q01955 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.05□□□□□ -2.08
COL4A3Q01955 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
COL4A3Q01955 Y_RNA.49-201ENST00000362714 112 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 RNU1-133P-201ENST00000364867 167 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 RNU6-42P-201ENST00000384165 107 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 SNORD38C-201ENST00000384381 69 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 RNU6-163P-201ENST00000384396 106 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 Y_RNA.549-201ENST00000384657 102 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 RNA5SP109-201ENST00000391010 116 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 RNA5SP338-201ENST00000410495 85 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 RNU6-537P-201ENST00000517277 103 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 MIR4303-201ENST00000581299 66 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 AC005786.1-201ENST00000588553 154 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 MIR4679-1-201ENST00000637619 75 ntBASIC2.04□□□□□ -2.08
COL4A3Q01955 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL4A3Q01955 MIR29C-201ENST00000385231 88 ntBASIC2.03□□□□□ -2.08
COL4A3Q01955 SNORA31.15-201ENST00000516771 132 ntBASIC2.03□□□□□ -2.08
COL4A3Q01955 SNORA18.7-201ENST00000516910 131 ntBASIC2.03□□□□□ -2.08
COL4A3Q01955 MIR3126-201ENST00000577443 74 ntBASIC2.03□□□□□ -2.08
COL4A3Q01955 AC021443.1-201ENST00000604478 211 ntBASIC2.03□□□□□ -2.08
COL4A3Q01955 SNORA28-201ENST00000606769 126 ntBASIC2.03□□□□□ -2.08
COL4A3Q01955 FAM35CP-201ENST00000554755 2470 ntBASIC2.03□□□□□ -2.08
COL4A3Q01955 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
COL4A3Q01955 RNY1P6-201ENST00000384193 109 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 RNU11-3P-201ENST00000391111 133 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 U8.17-201ENST00000391292 132 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 MIR1302-5-201ENST00000408164 150 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 RNU6-938P-201ENST00000411285 103 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A3Q01955 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A3Q01955 AC114811.1-201ENST00000507207 168 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 RNA5SP220-201ENST00000516298 104 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 SNORD36C-201ENST00000516733 66 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 uc_338.28-201ENST00000612082 187 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 MIR6515-201ENST00000619843 57 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 AC005336.3-201ENST00000623833 2679 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 RNU6-1014P-201ENST00000383940 103 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 Y_RNA.440-201ENST00000384120 114 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 RNU6-1113P-201ENST00000384348 107 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 RNU6-342P-201ENST00000384521 104 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 AL627390.1-201ENST00000396055 340 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 RNU6-554P-201ENST00000410466 106 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 HMGN2P32-201ENST00000444648 269 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 Z96811.1-201ENST00000445880 108 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A3Q01955 MIR4452-201ENST00000583004 71 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 AC027279.3-201ENST00000625055 122 ntBASIC2.02□□□□□ -2.09
COL4A3Q01955 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL4A3Q01955 MIR342-201ENST00000362212 99 ntBASIC2.01□□□□□ -2.09
COL4A3Q01955 Y_RNA.213-201ENST00000364178 111 ntBASIC2.01□□□□□ -2.09
COL4A3Q01955 RN7SKP200-201ENST00000410564 320 ntBASIC2.01□□□□□ -2.09
COL4A3Q01955 AC015922.2-201ENST00000435593 184 ntBASIC2.01□□□□□ -2.09
COL4A3Q01955 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.01□□□□□ -2.09
COL4A3Q01955 RNY4P20-201ENST00000516678 93 ntBASIC2.01□□□□□ -2.09
COL4A3Q01955 RNU6-1116P-201ENST00000517269 99 ntBASIC2.01□□□□□ -2.09
COL4A3Q01955 SUMO2P16-201ENST00000519475 264 ntBASIC2.01□□□□□ -2.09
COL4A3Q01955 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.01□□□□□ -2.09
COL4A3Q01955 AC022202.1-201ENST00000613515 211 ntBASIC2.01□□□□□ -2.09
COL4A3Q01955 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.01□□□□□ -2.09
COL4A3Q01955 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2□□□□□ -2.09
COL4A3Q01955 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2□□□□□ -2.09
COL4A3Q01955 Y_RNA.36-201ENST00000362602 112 ntBASIC2□□□□□ -2.09
COL4A3Q01955 RNA5SP190-201ENST00000365222 118 ntBASIC2□□□□□ -2.09
COL4A3Q01955 RNU6-756P-201ENST00000383997 107 ntBASIC2□□□□□ -2.09
COL4A3Q01955 BX510359.4-201ENST00000423750 193 ntBASIC2□□□□□ -2.09
COL4A3Q01955 RNU7-164P-201ENST00000459221 62 ntBASIC2□□□□□ -2.09
COL4A3Q01955 SNORA72.7-201ENST00000516349 94 ntBASIC2□□□□□ -2.09
COL4A3Q01955 AP000553.5-201ENST00000641933 54 ntBASIC2□□□□□ -2.09
COL4A3Q01955 AL596211.1-201ENST00000569873 2277 ntBASIC2□□□□□ -2.09
COL4A3Q01955 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
COL4A3Q01955 RNU6-414P-201ENST00000363705 104 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 Y_RNA.298-201ENST00000364960 107 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 Y_RNA.369-201ENST00000365568 117 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 SNORA51.5-201ENST00000384126 131 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 Y_RNA.454-201ENST00000384224 113 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 RNU6-424P-201ENST00000384367 105 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 HMGN2P35-201ENST00000412164 270 ntBASIC1.99□□□□□ -2.09
COL4A3Q01955 SNORA31.11-201ENST00000516528 139 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 192.7 ms