Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MIR4662B-201ENST00000579498 81 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 AL162730.1-201ENST00000605734 292 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 AL391903.3-201ENST00000612158 163 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 AC006441.5-201ENST00000612680 209 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 AL442067.1-201ENST00000613261 223 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 AL365265.1-201ENST00000621045 234 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
TNFRSF4P43489 AC008163.1-202ENST00000636004 2889 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 Y_RNA.65-201ENST00000362846 100 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 Y_RNA.262-201ENST00000364641 102 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 Y_RNA.304-201ENST00000365011 112 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 RNU6-1138P-201ENST00000365359 106 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 Y_RNA.562-201ENST00000384695 113 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 MIR200A-201ENST00000384875 90 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 MIR7-2-201ENST00000384970 110 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 MT-TT-201ENST00000387460 66 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 MIR548O-201ENST00000408583 114 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.91□□□□□ -2.26
TNFRSF4P43489 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.91□□□□□ -2.26
TNFRSF4P43489 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.91□□□□□ -2.26
TNFRSF4P43489 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.91□□□□□ -2.26
TNFRSF4P43489 RNU7-41P-201ENST00000515917 61 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 RNU7-25P-201ENST00000516544 62 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 RNU7-181P-201ENST00000517234 74 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 MIR4503-201ENST00000582187 83 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 MIR4282-201ENST00000583613 67 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.91□□□□□ -2.26
TNFRSF4P43489 MIR3192-201ENST00000584920 77 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 PRELID3BP2-201ENST00000605362 201 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 AC062037.2-201ENST00000610137 73 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 PVT1_3.1-201ENST00000620853 95 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 7SK.10-201ENST00000621414 298 ntBASIC0.91□□□□□ -2.26
TNFRSF4P43489 Y_RNA.76-201ENST00000362931 109 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 Y_RNA.144-201ENST00000363521 113 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 SNORD114-26-201ENST00000363543 72 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 RNA5SP48-201ENST00000363969 126 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 Y_RNA.199-201ENST00000364014 102 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 Y_RNA.292-201ENST00000364904 97 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 RNU4-17P-201ENST00000365598 141 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
TNFRSF4P43489 SNORD28B-201ENST00000390993 75 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 U8.17-201ENST00000391292 132 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 Y_RNA.622-201ENST00000411091 108 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 MRPL35P3-201ENST00000421557 364 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.9□□□□□ -2.27
TNFRSF4P43489 RNU7-90P-201ENST00000459216 62 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 RNU7-21P-201ENST00000459430 62 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 Y_RNA.666-201ENST00000516187 112 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 MIR548AR-201ENST00000582191 57 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 MIR3149-201ENST00000584629 83 ntBASIC0.9□□□□□ -2.27
TNFRSF4P43489 SNORA25.3-201ENST00000363205 127 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 snoU2_19.4-201ENST00000364329 80 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 Y_RNA.452-201ENST00000384202 108 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 Y_RNA.486-201ENST00000384398 107 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 RNU6-1067P-201ENST00000384752 107 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 MIR570-201ENST00000384917 97 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 SNORA75.2-201ENST00000391138 150 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 SNORA75.3-201ENST00000391231 150 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 AL606845.1-201ENST00000404881 255 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 SNORD124-201ENST00000459577 104 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 RPS26P48-201ENST00000491713 339 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.89□□□□□ -2.27
TNFRSF4P43489 RNU6-365P-201ENST00000517113 106 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.89□□□□□ -2.27
TNFRSF4P43489 MIR3128-201ENST00000581957 66 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 AC008133.2-201ENST00000624540 351 ntBASIC0.89□□□□□ -2.27
TNFRSF4P43489 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.89□□□□□ -2.27
TNFRSF4P43489 MIR103A2-201ENST00000362154 78 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 Y_RNA.60-201ENST00000362831 98 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNU6-653P-201ENST00000363074 106 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 Y_RNA.308-201ENST00000365043 101 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 SNORA1.2-201ENST00000365189 134 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 Y_RNA.370-201ENST00000365589 108 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 Y_RNA.432-201ENST00000384087 111 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNU6-463P-201ENST00000384340 107 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 Y_RNA.547-201ENST00000384654 119 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 MIR616-201ENST00000385293 97 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 SNORA26-201ENST00000391286 122 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNU2-70P-201ENST00000410718 179 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNU6-1299P-201ENST00000516316 100 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNU6-830P-201ENST00000516353 107 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNU6-126P-201ENST00000516685 103 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNU6-453P-201ENST00000516819 85 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNU6-1270P-201ENST00000517128 108 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 MIR4698-201ENST00000577795 80 ntBASIC0.88□□□□□ -2.27
TNFRSF4P43489 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
TNFRSF4P43489 RNA5SP264-201ENST00000363115 107 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 Y_RNA.193-201ENST00000363979 102 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 SNORA20.1-201ENST00000364790 130 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 Y_RNA.307-201ENST00000365022 117 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 RNU6-381P-201ENST00000391259 108 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 MIR942-201ENST00000401111 86 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.87□□□□□ -2.27
TNFRSF4P43489 POLR2J4-204ENST00000418424 324 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 AC004941.2-201ENST00000427009 228 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 snoU13.25-201ENST00000458945 104 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 PDCD5P2-201ENST00000507570 312 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 SCARNA8-201ENST00000515924 131 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 RNU4-57P-201ENST00000515980 135 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 RNU6-693P-201ENST00000516134 107 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 179.9 ms