Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNORD123-201ENST00000459473 70 ntBASIC1.25□□□□□ -2.21
MSH3P20585 RNU4-57P-201ENST00000515980 135 ntBASIC1.25□□□□□ -2.21
MSH3P20585 SNORA18.7-201ENST00000516910 131 ntBASIC1.25□□□□□ -2.21
MSH3P20585 RNU6-182P-201ENST00000516970 105 ntBASIC1.25□□□□□ -2.21
MSH3P20585 AL512310.8-201ENST00000550183 120 ntBASIC1.25□□□□□ -2.21
MSH3P20585 MIR3660-201ENST00000584845 100 ntBASIC1.25□□□□□ -2.21
MSH3P20585 snoU13.31-201ENST00000607291 104 ntBASIC1.25□□□□□ -2.21
MSH3P20585 MIR26B-201ENST00000362251 77 ntBASIC1.24□□□□□ -2.21
MSH3P20585 RNU6-682P-201ENST00000363843 106 ntBASIC1.24□□□□□ -2.21
MSH3P20585 Y_RNA.240-201ENST00000364469 95 ntBASIC1.24□□□□□ -2.21
MSH3P20585 RNU6-312P-201ENST00000364629 107 ntBASIC1.24□□□□□ -2.21
MSH3P20585 U8.17-201ENST00000391292 132 ntBASIC1.24□□□□□ -2.21
MSH3P20585 RPL30P7-201ENST00000479312 323 ntBASIC1.24□□□□□ -2.21
MSH3P20585 RNU6-861P-201ENST00000516745 106 ntBASIC1.24□□□□□ -2.21
MSH3P20585 MIR4431-201ENST00000579990 94 ntBASIC1.24□□□□□ -2.21
MSH3P20585 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
MSH3P20585 RNU6-643P-201ENST00000384018 107 ntBASIC1.23□□□□□ -2.21
MSH3P20585 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
MSH3P20585 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.23□□□□□ -2.21
MSH3P20585 AL603825.1-201ENST00000438481 80 ntBASIC1.23□□□□□ -2.21
MSH3P20585 RNU6-1270P-201ENST00000517128 108 ntBASIC1.23□□□□□ -2.21
MSH3P20585 MIR378D2-201ENST00000580636 98 ntBASIC1.23□□□□□ -2.21
MSH3P20585 MIR548AR-201ENST00000582191 57 ntBASIC1.23□□□□□ -2.21
MSH3P20585 AL357312.1-201ENST00000603879 298 ntBASIC1.23□□□□□ -2.21
MSH3P20585 SNORD115-28-201ENST00000363931 81 ntBASIC1.22□□□□□ -2.21
MSH3P20585 RNU6-939P-201ENST00000384634 107 ntBASIC1.22□□□□□ -2.21
MSH3P20585 RNU6-938P-201ENST00000411285 103 ntBASIC1.22□□□□□ -2.21
MSH3P20585 AC108729.3-201ENST00000513484 108 ntBASIC1.22□□□□□ -2.21
MSH3P20585 RN7SKP179-201ENST00000516126 217 ntBASIC1.22□□□□□ -2.21
MSH3P20585 RNU6-165P-201ENST00000517170 99 ntBASIC1.22□□□□□ -2.21
MSH3P20585 RNU7-181P-201ENST00000517234 74 ntBASIC1.22□□□□□ -2.21
MSH3P20585 MIR6078-201ENST00000611069 100 ntBASIC1.22□□□□□ -2.21
MSH3P20585 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
MSH3P20585 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
MSH3P20585 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.21□□□□□ -2.22
MSH3P20585 Y_RNA.37-201ENST00000362606 108 ntBASIC1.21□□□□□ -2.22
MSH3P20585 RNU6-978P-201ENST00000364371 103 ntBASIC1.21□□□□□ -2.22
MSH3P20585 SNORA1-201ENST00000384107 130 ntBASIC1.21□□□□□ -2.22
MSH3P20585 RNU6-907P-201ENST00000390924 102 ntBASIC1.21□□□□□ -2.22
MSH3P20585 SNORD28B-201ENST00000390993 75 ntBASIC1.21□□□□□ -2.22
MSH3P20585 AF228730.3-201ENST00000436691 102 ntBASIC1.21□□□□□ -2.22
MSH3P20585 SEPT7P4-201ENST00000437076 306 ntBASIC1.21□□□□□ -2.22
MSH3P20585 AC087499.4-201ENST00000448505 178 ntBASIC1.21□□□□□ -2.22
MSH3P20585 RNU7-43P-201ENST00000516554 64 ntBASIC1.21□□□□□ -2.22
MSH3P20585 MIR3668-201ENST00000582138 75 ntBASIC1.21□□□□□ -2.22
MSH3P20585 FTX_2.1-201ENST00000618816 94 ntBASIC1.21□□□□□ -2.22
MSH3P20585 AC134878.1-201ENST00000619901 243 ntBASIC1.21□□□□□ -2.22
MSH3P20585 Y_RNA.338-201ENST00000365320 114 ntBASIC1.2□□□□□ -2.22
MSH3P20585 Y_RNA.441-201ENST00000384123 112 ntBASIC1.2□□□□□ -2.22
MSH3P20585 MIR520C-201ENST00000385005 87 ntBASIC1.2□□□□□ -2.22
MSH3P20585 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
MSH3P20585 AC006461.1-201ENST00000412637 326 ntBASIC1.2□□□□□ -2.22
MSH3P20585 AC005840.1-201ENST00000498412 377 ntBASIC1.2□□□□□ -2.22
MSH3P20585 Y_RNA.662-201ENST00000516028 97 ntBASIC1.2□□□□□ -2.22
MSH3P20585 SNORD111.1-201ENST00000516421 86 ntBASIC1.2□□□□□ -2.22
MSH3P20585 SNORD116-25-201ENST00000516517 92 ntBASIC1.2□□□□□ -2.22
MSH3P20585 CYP3A52P-201ENST00000563326 91 ntBASIC1.2□□□□□ -2.22
MSH3P20585 MIR4498-201ENST00000577599 66 ntBASIC1.2□□□□□ -2.22
MSH3P20585 MIR4764-201ENST00000580680 88 ntBASIC1.2□□□□□ -2.22
MSH3P20585 AL096861.1-201ENST00000610899 123 ntBASIC1.2□□□□□ -2.22
MSH3P20585 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.2□□□□□ -2.22
MSH3P20585 SNORA1.2-201ENST00000365189 134 ntBASIC1.19□□□□□ -2.22
MSH3P20585 Y_RNA.370-201ENST00000365589 108 ntBASIC1.19□□□□□ -2.22
MSH3P20585 Y_RNA.542-201ENST00000384641 111 ntBASIC1.19□□□□□ -2.22
MSH3P20585 RNU5E-9P-201ENST00000411164 104 ntBASIC1.19□□□□□ -2.22
MSH3P20585 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.19□□□□□ -2.22
MSH3P20585 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.19□□□□□ -2.22
MSH3P20585 AC074198.2-201ENST00000508153 258 ntBASIC1.19□□□□□ -2.22
MSH3P20585 RNU2-13P-201ENST00000515909 113 ntBASIC1.19□□□□□ -2.22
MSH3P20585 RNU6-947P-201ENST00000516264 106 ntBASIC1.19□□□□□ -2.22
MSH3P20585 MIR3192-201ENST00000584920 77 ntBASIC1.19□□□□□ -2.22
MSH3P20585 AL365205.2-201ENST00000594586 68 ntBASIC1.19□□□□□ -2.22
MSH3P20585 RNU4-84P-201ENST00000364200 139 ntBASIC1.18□□□□□ -2.22
MSH3P20585 Y_RNA.327-201ENST00000365201 102 ntBASIC1.18□□□□□ -2.22
MSH3P20585 Y_RNA.357-201ENST00000365487 109 ntBASIC1.18□□□□□ -2.22
MSH3P20585 RNU6-1292P-201ENST00000383856 107 ntBASIC1.18□□□□□ -2.22
MSH3P20585 Y_RNA.410-201ENST00000383992 113 ntBASIC1.18□□□□□ -2.22
MSH3P20585 Y_RNA.494-201ENST00000384432 111 ntBASIC1.18□□□□□ -2.22
MSH3P20585 SNORD77.3-201ENST00000391113 65 ntBASIC1.18□□□□□ -2.22
MSH3P20585 snoU13.25-201ENST00000458945 104 ntBASIC1.18□□□□□ -2.22
MSH3P20585 AC107027.2-201ENST00000512197 115 ntBASIC1.18□□□□□ -2.22
MSH3P20585 RNU7-41P-201ENST00000515917 61 ntBASIC1.18□□□□□ -2.22
MSH3P20585 RNU7-121P-201ENST00000516604 62 ntBASIC1.18□□□□□ -2.22
MSH3P20585 SNORD36C-201ENST00000516733 66 ntBASIC1.18□□□□□ -2.22
MSH3P20585 RN7SKP88-201ENST00000516847 250 ntBASIC1.18□□□□□ -2.22
MSH3P20585 AC090821.2-201ENST00000523552 176 ntBASIC1.18□□□□□ -2.22
MSH3P20585 AP003484.1-201ENST00000530974 250 ntBASIC1.18□□□□□ -2.22
MSH3P20585 AL359821.1-201ENST00000605519 182 ntBASIC1.18□□□□□ -2.22
MSH3P20585 AC098479.1-201ENST00000609225 154 ntBASIC1.18□□□□□ -2.22
MSH3P20585 7SK.8-201ENST00000612110 250 ntBASIC1.18□□□□□ -2.22
MSH3P20585 7SK.11-201ENST00000615477 250 ntBASIC1.18□□□□□ -2.22
MSH3P20585 7SK.13-201ENST00000622040 250 ntBASIC1.18□□□□□ -2.22
MSH3P20585 SNORD115-34-201ENST00000362441 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-12-201ENST00000362583 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-29-201ENST00000362834 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-9-201ENST00000362912 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-21-201ENST00000362963 81 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-14-201ENST00000363090 81 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-13-201ENST00000363358 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-41-201ENST00000363608 82 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 180.1 ms