Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 AC105272.1-201ENST00000438604 198 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 RN7SKP132-201ENST00000516001 208 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 Y_RNA.685-201ENST00000516532 108 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 RNU6-638P-201ENST00000516582 104 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 RNU7-181P-201ENST00000517234 74 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 AC095038.3-201ENST00000634439 195 ntBASIC2.95□□□□□ -1.94
USP3Q9Y6I4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
USP3Q9Y6I4 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 SNORD45B-201ENST00000364617 72 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 Y_RNA.430-201ENST00000384081 110 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 SNORA24-201ENST00000384096 131 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 RNU6-1031P-201ENST00000384773 107 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 MIR577-201ENST00000385196 96 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 RNU6-1275P-201ENST00000391087 107 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 AC087499.2-201ENST00000432861 149 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.94□□□□□ -1.94
USP3Q9Y6I4 HSPE1P9-201ENST00000440046 311 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 RPS29P29-201ENST00000456396 171 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.94□□□□□ -1.94
USP3Q9Y6I4 SNORA31.4-201ENST00000516049 129 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 MIR6841-201ENST00000637129 72 ntBASIC2.94□□□□□ -1.94
USP3Q9Y6I4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.93□□□□□ -1.94
USP3Q9Y6I4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
USP3Q9Y6I4 Y_RNA.494-201ENST00000384432 111 ntBASIC2.93□□□□□ -1.94
USP3Q9Y6I4 RNU6-1067P-201ENST00000384752 107 ntBASIC2.93□□□□□ -1.94
USP3Q9Y6I4 BX510359.4-201ENST00000423750 193 ntBASIC2.93□□□□□ -1.94
USP3Q9Y6I4 Z96811.1-201ENST00000445880 108 ntBASIC2.93□□□□□ -1.94
USP3Q9Y6I4 AC003982.1-202ENST00000469928 248 ntBASIC2.93□□□□□ -1.94
USP3Q9Y6I4 GTF3AP2-201ENST00000557014 266 ntBASIC2.93□□□□□ -1.94
USP3Q9Y6I4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.93□□□□□ -1.94
USP3Q9Y6I4 MIR1255B1-201ENST00000636325 63 ntBASIC2.93□□□□□ -1.94
USP3Q9Y6I4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.92□□□□□ -1.94
USP3Q9Y6I4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USP3Q9Y6I4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USP3Q9Y6I4 SNORA22.1-201ENST00000362701 134 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 RNU6-170P-201ENST00000362832 104 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 Y_RNA.219-201ENST00000364232 113 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 RNU1-91P-201ENST00000364746 163 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 RNU1-109P-201ENST00000383960 147 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 MIR520A-201ENST00000384862 85 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 SNORA31.26-201ENST00000517250 137 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.92□□□□□ -1.94
USP3Q9Y6I4 Y_RNA.773-201ENST00000607168 90 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 AL513423.1-201ENST00000621695 132 ntBASIC2.92□□□□□ -1.94
USP3Q9Y6I4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
USP3Q9Y6I4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
USP3Q9Y6I4 MAPK10-266ENST00000641066 6555 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNU1-112P-201ENST00000364401 164 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNU1-148P-201ENST00000384472 162 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 MIR9-1-201ENST00000385198 89 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNU11-3P-201ENST00000391111 133 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 AL138827.1-201ENST00000402666 306 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNA5SP21-201ENST00000410917 96 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 MRPL35P3-201ENST00000421557 364 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNU7-73P-201ENST00000458743 63 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNU7-67P-201ENST00000459003 62 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNU2-13P-201ENST00000515909 113 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNA5SP385-201ENST00000515947 110 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNA5SP356-201ENST00000515972 94 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 RNA5SP481-201ENST00000516814 122 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 AC006023.1-201ENST00000603944 259 ntBASIC2.91□□□□□ -1.94
USP3Q9Y6I4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USP3Q9Y6I4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
USP3Q9Y6I4 MIR26A1-201ENST00000362205 77 ntBASIC2.9□□□□□ -1.95
USP3Q9Y6I4 Y_RNA.290-201ENST00000364879 114 ntBASIC2.9□□□□□ -1.95
USP3Q9Y6I4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.9□□□□□ -1.95
USP3Q9Y6I4 MIR4506-201ENST00000584693 77 ntBASIC2.9□□□□□ -1.95
USP3Q9Y6I4 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.9□□□□□ -1.95
USP3Q9Y6I4 SNORD3E-202ENST00000627253 216 ntBASIC2.9□□□□□ -1.95
USP3Q9Y6I4 MIR1245B-201ENST00000636115 69 ntBASIC2.9□□□□□ -1.95
USP3Q9Y6I4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
USP3Q9Y6I4 SNORA38-201ENST00000363946 132 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 Y_RNA.510-201ENST00000384511 114 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 MIR634-201ENST00000385208 97 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 RN7SKP192-201ENST00000411291 327 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.89□□□□□ -1.95
USP3Q9Y6I4 RPL23AP63-201ENST00000498752 471 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 RNU7-61P-201ENST00000515897 61 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 RNA5SP33-201ENST00000516687 98 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 MIR4439-201ENST00000583746 80 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 AC096720.1-201ENST00000604441 183 ntBASIC2.89□□□□□ -1.95
USP3Q9Y6I4 Y_RNA.171-201ENST00000363760 102 ntBASIC2.88□□□□□ -1.95
USP3Q9Y6I4 SNORA48.1-201ENST00000390879 135 ntBASIC2.88□□□□□ -1.95
USP3Q9Y6I4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.88□□□□□ -1.95
USP3Q9Y6I4 MIR3605-201ENST00000583214 100 ntBASIC2.88□□□□□ -1.95
USP3Q9Y6I4 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
USP3Q9Y6I4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP3Q9Y6I4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP3Q9Y6I4 MIR494-201ENST00000349529 81 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 MIR516B2-201ENST00000385190 85 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
USP3Q9Y6I4 SNORA26.6-201ENST00000391256 115 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 AL451046.2-201ENST00000403074 277 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 RNU2-7P-201ENST00000410794 178 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 RNA5SP57-201ENST00000459463 123 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 RNU6-958P-201ENST00000516995 106 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 MIR548AE2-201ENST00000583456 67 ntBASIC2.87□□□□□ -1.95
USP3Q9Y6I4 AL513534.2-201ENST00000603836 250 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms