Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SNORD116-25-201ENST00000516517 92 ntBASIC1.85□□□□□ -2.11
PCDHA1Q9Y5I3 SUMO2P16-201ENST00000519475 264 ntBASIC1.85□□□□□ -2.11
PCDHA1Q9Y5I3 AC012493.3-201ENST00000604494 112 ntBASIC1.85□□□□□ -2.11
PCDHA1Q9Y5I3 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.85□□□□□ -2.11
PCDHA1Q9Y5I3 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 SNORD61-201ENST00000384252 73 ntBASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 MIR513A1-201ENST00000385138 129 ntBASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 AC090142.3-201ENST00000519012 385 ntBASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 MIR3198-2-201ENST00000577868 80 ntBASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 MIR4303-201ENST00000581299 66 ntBASIC1.84□□□□□ -2.11
PCDHA1Q9Y5I3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
PCDHA1Q9Y5I3 MIR378A-201ENST00000362177 66 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 Y_RNA.338-201ENST00000365320 114 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 SNORA2.2-201ENST00000365473 135 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-597P-201ENST00000365620 102 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 MIR548A2-201ENST00000384956 97 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 MIR136-201ENST00000385207 82 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 MIR653-201ENST00000385279 96 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 RNU4-62P-201ENST00000410125 130 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 snoU13.9-201ENST00000458927 103 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-693P-201ENST00000516134 107 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 MIR3144-201ENST00000579460 79 ntBASIC1.83□□□□□ -2.12
PCDHA1Q9Y5I3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
PCDHA1Q9Y5I3 Y_RNA.547-201ENST00000384654 119 ntBASIC1.82□□□□□ -2.12
PCDHA1Q9Y5I3 MIR526A1-201ENST00000384897 85 ntBASIC1.82□□□□□ -2.12
PCDHA1Q9Y5I3 MIR548O-201ENST00000408583 114 ntBASIC1.82□□□□□ -2.12
PCDHA1Q9Y5I3 BTF3P4-201ENST00000418852 495 ntBASIC1.82□□□□□ -2.12
PCDHA1Q9Y5I3 AC007751.1-201ENST00000529260 376 ntBASIC1.82□□□□□ -2.12
PCDHA1Q9Y5I3 SNORD53B-201ENST00000577887 78 ntBASIC1.82□□□□□ -2.12
PCDHA1Q9Y5I3 ICE2P2-201ENST00000483823 2787 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 MIR302D-201ENST00000362275 68 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-1062P-201ENST00000383908 107 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 Y_RNA.393-201ENST00000383936 102 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 Y_RNA.542-201ENST00000384641 111 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 MIR518F-201ENST00000384973 87 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 AC008834.1-201ENST00000511612 175 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 RNU7-25P-201ENST00000516544 62 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 MIR3646-201ENST00000578301 84 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 AL365205.2-201ENST00000594586 68 ntBASIC1.81□□□□□ -2.12
PCDHA1Q9Y5I3 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
PCDHA1Q9Y5I3 RNA5SP259-201ENST00000365541 109 ntBASIC1.8□□□□□ -2.12
PCDHA1Q9Y5I3 Y_RNA.521-201ENST00000384560 114 ntBASIC1.8□□□□□ -2.12
PCDHA1Q9Y5I3 AC090049.2-201ENST00000550377 109 ntBASIC1.8□□□□□ -2.12
PCDHA1Q9Y5I3 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.8□□□□□ -2.12
PCDHA1Q9Y5I3 DNAJC19P2-201ENST00000593340 302 ntBASIC1.8□□□□□ -2.12
PCDHA1Q9Y5I3 AC104465.1-201ENST00000611365 139 ntBASIC1.8□□□□□ -2.12
PCDHA1Q9Y5I3 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 SNORA25.7-201ENST00000364375 127 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-60P-201ENST00000364792 103 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-1292P-201ENST00000383856 107 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-449P-201ENST00000383914 107 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-804P-201ENST00000384286 107 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-768P-201ENST00000384683 107 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 AC005908.1-201ENST00000468701 347 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 AC108729.3-201ENST00000513484 108 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 RNU4-57P-201ENST00000515980 135 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-917P-201ENST00000516294 104 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 RNU6-1270P-201ENST00000517128 108 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 MIR4498-201ENST00000577599 66 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 AL645939.4-201ENST00000604495 135 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 BX248123.2-201ENST00000606318 124 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 AC134878.1-201ENST00000619901 243 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 AC106754.2-201ENST00000623006 233 ntBASIC1.79□□□□□ -2.12
PCDHA1Q9Y5I3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 SNORD33-201ENST00000362761 85 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 SNORD115-28-201ENST00000363931 81 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 RNU1-42P-201ENST00000364033 160 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 SNORD1A-201ENST00000364968 72 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 MIR516B2-201ENST00000385190 85 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 RPL31P63-201ENST00000422565 375 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 AC087499.4-201ENST00000448505 178 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 FAM106DP-201ENST00000586416 501 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 AL513534.2-201ENST00000603836 250 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 AC015726.2-201ENST00000620112 122 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 MTND1P7-201ENST00000632801 297 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 AC021753.1-201ENST00000635724 168 ntBASIC1.78□□□□□ -2.12
PCDHA1Q9Y5I3 Y_RNA.410-201ENST00000383992 113 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 SNORA1-201ENST00000384107 130 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 MIR517C-201ENST00000385103 95 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 MIR1323-201ENST00000408090 73 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 AP1B1P2-201ENST00000416196 106 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 HSPE1P24-201ENST00000450782 238 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 RNU6-322P-201ENST00000516010 103 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 RNU6-255P-201ENST00000516957 105 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 snoU13.31-201ENST00000607291 104 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.77□□□□□ -2.13
PCDHA1Q9Y5I3 Y_RNA.37-201ENST00000362606 108 ntBASIC1.76□□□□□ -2.13
PCDHA1Q9Y5I3 RNU6-1130P-201ENST00000365434 107 ntBASIC1.76□□□□□ -2.13
PCDHA1Q9Y5I3 Y_RNA.398-201ENST00000383952 99 ntBASIC1.76□□□□□ -2.13
PCDHA1Q9Y5I3 SNORA67.6-201ENST00000391093 99 ntBASIC1.76□□□□□ -2.13
PCDHA1Q9Y5I3 RNU1-78P-201ENST00000391248 165 ntBASIC1.76□□□□□ -2.13
PCDHA1Q9Y5I3 U8.17-201ENST00000391292 132 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 261.4 ms