Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR8058-201ENST00000615737 89 ntBASIC3.53□□□□□ -1.84
VPS9D1Q9Y2B5 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
VPS9D1Q9Y2B5 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.85
VPS9D1Q9Y2B5 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 MIR9-2-201ENST00000384838 87 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 SNORA26.7-201ENST00000391288 122 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 RNU4-83P-201ENST00000410863 133 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 AC023141.11-201ENST00000508864 202 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 AC133485.1-201ENST00000567176 124 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 NEAT1_2.1-201ENST00000620525 105 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 AC022149.2-201ENST00000621061 203 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 Z97988.1-201ENST00000637697 135 ntBASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS9D1Q9Y2B5 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 RNU6-208P-201ENST00000362431 107 ntBASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 SNORD9-201ENST00000362566 104 ntBASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 RNA5SP51-201ENST00000364750 119 ntBASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 AL035423.1-201ENST00000420331 213 ntBASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 AC026333.2-201ENST00000542164 106 ntBASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 MIR4425-201ENST00000580572 84 ntBASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 MIR4536-1-201ENST00000583537 88 ntBASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
VPS9D1Q9Y2B5 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 RNA5SP295-201ENST00000362655 121 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 SNORD115-31-201ENST00000365318 82 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 SNORA25B-201ENST00000365507 128 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 CD24P4-201ENST00000382840 243 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 HSPE1P9-201ENST00000440046 311 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 RNU7-156P-201ENST00000517214 74 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 MIR3169-201ENST00000578032 83 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 AC005520.4-201ENST00000604337 90 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 MIR6075-201ENST00000620782 95 ntBASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS9D1Q9Y2B5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 RNY1P13-201ENST00000365030 105 ntBASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 SNORA72.6-201ENST00000384520 129 ntBASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 AC015818.7-201ENST00000428754 109 ntBASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 CYCSP4-201ENST00000429682 331 ntBASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 RPL23AP6-201ENST00000446637 472 ntBASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 AC067747.1-201ENST00000608026 250 ntBASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS9D1Q9Y2B5 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 RNU6-23P-201ENST00000363283 107 ntBASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 RNY1P2-201ENST00000364820 117 ntBASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 RNU6-950P-201ENST00000384651 107 ntBASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 RNU6-1237P-201ENST00000384777 107 ntBASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 SNRPGP12-201ENST00000449481 213 ntBASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 AC023790.1-201ENST00000482174 347 ntBASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 RPL12P50-201ENST00000603116 116 ntBASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS9D1Q9Y2B5 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 SNORA38-201ENST00000363946 132 ntBASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 RNU6-1019P-201ENST00000364424 107 ntBASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 AC244636.1-201ENST00000421152 228 ntBASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 AC104619.4-201ENST00000510773 249 ntBASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 RN7SKP132-201ENST00000516001 208 ntBASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 RNU6-850P-201ENST00000516934 103 ntBASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 AC090897.1-201ENST00000580909 226 ntBASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
VPS9D1Q9Y2B5 SNORA8.1-201ENST00000384250 140 ntBASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 MIR200C-201ENST00000384980 68 ntBASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 HSPE1P24-201ENST00000450782 238 ntBASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 AC093908.1-201ENST00000623125 8092 ntBASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS9D1Q9Y2B5 Y_RNA.12-201ENST00000362393 112 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 SNORA63.1-201ENST00000362493 131 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 RNA5SP139-201ENST00000364340 117 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 MIR184-201ENST00000384962 84 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 RNU6-205P-201ENST00000390858 107 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 RNU1-95P-201ENST00000516357 160 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 RNU1-128P-201ENST00000516704 160 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 RNU6-711P-201ENST00000517255 106 ntBASIC3.45□□□□□ -1.86
VPS9D1Q9Y2B5 CYP3A52P-201ENST00000563326 91 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms