Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 Y_RNA.537-201ENST00000384626 109 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.539-201ENST00000384635 107 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 AL606845.1-201ENST00000404881 255 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 MIR1285-1-201ENST00000408593 84 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 RNU6-938P-201ENST00000411285 103 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.680-201ENST00000516441 93 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 AC109810.1-201ENST00000534066 224 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 MIR4503-201ENST00000582187 83 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 HSPE1P19-201ENST00000603327 295 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.66-201ENST00000362862 102 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.91-201ENST00000363042 107 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 SNORD115-28-201ENST00000363931 81 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 SNORD27-201ENST00000363981 72 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 RNY3P5-201ENST00000384127 102 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 SNORA51.10-201ENST00000384418 136 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.622-201ENST00000411091 108 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 RNU2-55P-201ENST00000411146 174 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 SNORD124-201ENST00000459577 104 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 RNU6-693P-201ENST00000516134 107 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 RNU6-1299P-201ENST00000516316 100 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 RNU6-365P-201ENST00000517113 106 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 MIR4303-201ENST00000581299 66 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 AC062037.2-201ENST00000610137 73 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 SEPT14P17-201ENST00000617978 177 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 U4.1-201ENST00000620349 87 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 MTND1P7-201ENST00000632801 297 ntBASIC1.04□□□□□ -2.24
CHMP1AQ9HD42 RNU6-888P-201ENST00000363010 101 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.262-201ENST00000364641 102 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.634-201ENST00000364811 113 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.330-201ENST00000365230 109 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNY4P28-201ENST00000365281 93 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.350-201ENST00000365409 98 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNU6-574P-201ENST00000384265 107 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNU6-1067P-201ENST00000384752 107 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNU6-1228P-201ENST00000391014 107 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 SNORD58.1-201ENST00000391313 66 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNU6-847P-201ENST00000411115 108 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNU7-90P-201ENST00000459216 62 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 AC004223.1-201ENST00000479840 271 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNU6-561P-201ENST00000516222 102 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.673-201ENST00000516306 88 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNY3P16-201ENST00000516338 101 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNU6-126P-201ENST00000516685 103 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 RNU6-1270P-201ENST00000517128 108 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 MIR548AO-201ENST00000579992 96 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 AL512598.1-201ENST00000610158 273 ntBASIC1.03□□□□□ -2.24
CHMP1AQ9HD42 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.20-201ENST00000362479 113 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.37-201ENST00000362606 108 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.269-201ENST00000364685 89 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 RNU4-17P-201ENST00000365598 141 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 SNORA40.6-201ENST00000391153 128 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 MIR1261-201ENST00000408659 82 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 MRPL35P3-201ENST00000421557 364 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 MIR3128-201ENST00000581957 66 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 AC243994.1-201ENST00000618627 109 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 MIR6516-201ENST00000630554 81 ntBASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
CHMP1AQ9HD42 RNU1-17P-201ENST00000363022 152 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 SNORD45.3-201ENST00000363836 72 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.193-201ENST00000363979 102 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.241-201ENST00000364470 117 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.432-201ENST00000384087 111 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 SNORA24-201ENST00000384096 131 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 RNU6-196P-201ENST00000384315 107 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 AC087499.4-201ENST00000448505 178 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 RPS29P29-201ENST00000456396 171 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 RNA5SP153-201ENST00000516498 76 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 RNU6-504P-201ENST00000516568 104 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 RNU11-2P-201ENST00000516898 142 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 MIR3945-201ENST00000581853 98 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 AC097639.2-201ENST00000603159 172 ntBASIC1.01□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-34-201ENST00000362441 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-12-201ENST00000362583 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-29-201ENST00000362834 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.65-201ENST00000362846 100 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-9-201ENST00000362912 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-21-201ENST00000362963 81 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-14-201ENST00000363090 81 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-13-201ENST00000363358 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-41-201ENST00000363608 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-11-201ENST00000363616 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-5-201ENST00000363633 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-39-201ENST00000363694 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-4-201ENST00000363810 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-16-201ENST00000363887 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-6-201ENST00000363942 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-42-201ENST00000364273 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 RNU6-654P-201ENST00000364373 107 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-15-201ENST00000364809 81 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-1-201ENST00000364961 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-26-201ENST00000365067 82 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 275.2 ms