Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PCIF1Q9H4Z3 Y_RNA.37-201ENST00000362606 108 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 SNORD114-1-201ENST00000362705 72 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 MIR17-201ENST00000385012 84 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 MIR452-201ENST00000385020 85 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 RNU6-938P-201ENST00000411285 103 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 SNORD36C-201ENST00000516733 66 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 MIR5197-201ENST00000583721 112 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 AC134878.1-201ENST00000619901 243 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 AP001340.1-201ENST00000624405 217 ntBASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
PCIF1Q9H4Z3 AC131280.1-202ENST00000624067 4211 ntBASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 AL596028.1-201ENST00000326971 197 ntBASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 RNU6-1123P-201ENST00000362347 106 ntBASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 AL161935.2-201ENST00000414627 60 ntBASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 AC003989.2-201ENST00000440224 169 ntBASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 RNU6-971P-201ENST00000516920 106 ntBASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 MIR7843-201ENST00000622274 79 ntBASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.09□□□□□ -2.07
PCIF1Q9H4Z3 MTND5P32-201ENST00000560711 1802 ntBASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 Y_RNA.120-201ENST00000363304 110 ntBASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 AL445685.2-201ENST00000422551 342 ntBASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 HMGN2P38-201ENST00000423806 265 ntBASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-237P-201ENST00000515985 71 ntBASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-830P-201ENST00000516353 107 ntBASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 MIR4713-201ENST00000582691 75 ntBASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 U7.2-201ENST00000607576 63 ntBASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
PCIF1Q9H4Z3 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-414P-201ENST00000363705 104 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-457P-201ENST00000363999 107 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 Y_RNA.410-201ENST00000383992 113 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-959P-201ENST00000384671 107 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 AL606753.1-201ENST00000427435 87 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 JTBP1-201ENST00000441314 247 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 RNA5SP236-201ENST00000516169 116 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-1149P-201ENST00000516810 97 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 SCARNA15-202ENST00000516881 127 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 MIR203B-201ENST00000636080 86 ntBASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.07□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-661P-201ENST00000362409 107 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-508P-201ENST00000363231 103 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-1189P-201ENST00000383958 107 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 AC004965.1-201ENST00000413033 213 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 RPL23AP6-201ENST00000446637 472 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 RNU7-181P-201ENST00000517234 74 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 SUMO2P16-201ENST00000519475 264 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 AP003484.1-201ENST00000530974 250 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 AC106754.2-201ENST00000623006 233 ntBASIC2.06□□□□□ -2.08
PCIF1Q9H4Z3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.05□□□□□ -2.08
PCIF1Q9H4Z3 Y_RNA.294-201ENST00000364916 102 ntBASIC2.05□□□□□ -2.08
PCIF1Q9H4Z3 MIR136-201ENST00000385207 82 ntBASIC2.05□□□□□ -2.08
PCIF1Q9H4Z3 SNORA40.18-201ENST00000391200 128 ntBASIC2.05□□□□□ -2.08
PCIF1Q9H4Z3 AL356379.1-201ENST00000414105 126 ntBASIC2.05□□□□□ -2.08
PCIF1Q9H4Z3 MIR4448-201ENST00000584360 86 ntBASIC2.05□□□□□ -2.08
PCIF1Q9H4Z3 AC011603.4-201ENST00000611325 277 ntBASIC2.05□□□□□ -2.08
PCIF1Q9H4Z3 TUG1_4.1-201ENST00000619464 181 ntBASIC2.05□□□□□ -2.08
PCIF1Q9H4Z3 RNA5SP432-201ENST00000362480 116 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 Y_RNA.218-201ENST00000364218 104 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 Y_RNA.440-201ENST00000384120 114 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 AC019129.1-201ENST00000403786 261 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 AC087499.4-201ENST00000448505 178 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-1211P-201ENST00000459179 105 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 RNU6-917P-201ENST00000516294 104 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 Y_RNA.690-201ENST00000516603 95 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 DEFB122-202ENST00000569013 197 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 AC103810.8-201ENST00000607347 118 ntBASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
PCIF1Q9H4Z3 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.03□□□□□ -2.08
PCIF1Q9H4Z3 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
PCIF1Q9H4Z3 U8.17-201ENST00000391292 132 ntBASIC2.03□□□□□ -2.08
PCIF1Q9H4Z3 AL603914.1-201ENST00000401964 204 ntBASIC2.03□□□□□ -2.08
PCIF1Q9H4Z3 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.03□□□□□ -2.08
PCIF1Q9H4Z3 MIR4524B-201ENST00000581569 115 ntBASIC2.03□□□□□ -2.08
PCIF1Q9H4Z3 MIR6840-201ENST00000611937 71 ntBASIC2.03□□□□□ -2.08
PCIF1Q9H4Z3 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
PCIF1Q9H4Z3 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 Y_RNA.241-201ENST00000364470 117 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 RNU6-309P-201ENST00000364573 106 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 SNORA2.2-201ENST00000365473 135 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 SNORD18B-201ENST00000365659 72 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 MIR513A1-201ENST00000385138 129 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 MIR1289-2-201ENST00000408360 111 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 MIR1267-201ENST00000408723 78 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 RPS29P11-201ENST00000496507 171 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 FAM106DP-201ENST00000586416 501 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 ZNF355P-201ENST00000427301 3216 ntBASIC2.02□□□□□ -2.09
PCIF1Q9H4Z3 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
PCIF1Q9H4Z3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
PCIF1Q9H4Z3 Y_RNA.280-201ENST00000364765 112 ntBASIC2.01□□□□□ -2.09
PCIF1Q9H4Z3 MIR539-201ENST00000365690 78 ntBASIC2.01□□□□□ -2.09
PCIF1Q9H4Z3 Y_RNA.494-201ENST00000384432 111 ntBASIC2.01□□□□□ -2.09
PCIF1Q9H4Z3 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 145 ms