Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 MIR3618-201ENST00000580330 88 ntBASIC1.5□□□□□ -2.17
NPAS1Q99742 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.49□□□□□ -2.17
NPAS1Q99742 Y_RNA.75-201ENST00000362927 97 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 RNA5SP99-201ENST00000364020 114 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 RNU6-484P-201ENST00000384016 107 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 SNORD61-201ENST00000384252 73 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 Y_RNA.547-201ENST00000384654 119 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 MIR520C-201ENST00000385005 87 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 SNORA17.3-201ENST00000391159 129 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 U8.17-201ENST00000391292 132 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 AC245517.4-201ENST00000448601 281 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 snoU13.23-201ENST00000458863 104 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 RNU7-181P-201ENST00000517234 74 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 MIR3683-201ENST00000580847 82 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 AC004792.1-201ENST00000614523 137 ntBASIC1.49□□□□□ -2.17
NPAS1Q99742 SNORD115-28-201ENST00000363931 81 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 SNORA1.2-201ENST00000365189 134 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 Y_RNA.435-201ENST00000384095 112 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
NPAS1Q99742 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.48□□□□□ -2.17
NPAS1Q99742 AC107297.1-201ENST00000459991 176 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 Y_RNA.662-201ENST00000516028 97 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 RNU6-861P-201ENST00000516745 106 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 RN7SKP88-201ENST00000516847 250 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 RNU6-548P-201ENST00000517083 115 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 SNORA74.3-201ENST00000517108 154 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 RNU6-902P-201ENST00000517212 91 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 MRPS18CP4-201ENST00000535821 231 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 AC104984.5-201ENST00000586878 94 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 7SK.8-201ENST00000612110 250 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 7SK.11-201ENST00000615477 250 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 7SK.13-201ENST00000622040 250 ntBASIC1.48□□□□□ -2.17
NPAS1Q99742 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.48□□□□□ -2.17
NPAS1Q99742 RNU6-312P-201ENST00000364629 107 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 SNORD24-201ENST00000383884 75 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 RNU6-643P-201ENST00000384018 107 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 Y_RNA.785-201ENST00000384290 109 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.47□□□□□ -2.17
NPAS1Q99742 RNU6-830P-201ENST00000516353 107 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 SNORD116-25-201ENST00000516517 92 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 AL512310.8-201ENST00000550183 120 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 MIR4255-201ENST00000579351 72 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 MIR378D2-201ENST00000580636 98 ntBASIC1.47□□□□□ -2.17
NPAS1Q99742 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.47□□□□□ -2.17
NPAS1Q99742 Y_RNA.241-201ENST00000364470 117 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 Y_RNA.270-201ENST00000364693 104 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 Y_RNA.370-201ENST00000365589 108 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
NPAS1Q99742 RPS27P16-201ENST00000425758 201 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 RNU7-120P-201ENST00000459334 63 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 AC108210.2-201ENST00000503681 201 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 SNORD111.1-201ENST00000516421 86 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 MIR3664-201ENST00000579074 99 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 MIR502-201ENST00000606349 86 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 AC134878.1-201ENST00000619901 243 ntBASIC1.46□□□□□ -2.18
NPAS1Q99742 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.46□□□□□ -2.18
NPAS1Q99742 SNORD41-201ENST00000386967 70 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 MIR1323-201ENST00000408090 73 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 RNU4-43P-201ENST00000410628 137 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 SEPT7P4-201ENST00000437076 306 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 RNU7-43P-201ENST00000516554 64 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 AL160236.1-201ENST00000556317 195 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 MIR4431-201ENST00000579990 94 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 MIR4764-201ENST00000580680 88 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 MIR4303-201ENST00000581299 66 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 MIR548AR-201ENST00000582191 57 ntBASIC1.45□□□□□ -2.18
NPAS1Q99742 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.45□□□□□ -2.18
NPAS1Q99742 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.45□□□□□ -2.18
NPAS1Q99742 Y_RNA.23-201ENST00000362496 106 ntBASIC1.44□□□□□ -2.18
NPAS1Q99742 RNU6-888P-201ENST00000363010 101 ntBASIC1.44□□□□□ -2.18
NPAS1Q99742 MIR570-201ENST00000384917 97 ntBASIC1.44□□□□□ -2.18
NPAS1Q99742 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.44□□□□□ -2.18
NPAS1Q99742 AC107027.2-201ENST00000512197 115 ntBASIC1.44□□□□□ -2.18
NPAS1Q99742 CYP3A52P-201ENST00000563326 91 ntBASIC1.44□□□□□ -2.18
NPAS1Q99742 MIR3129-201ENST00000581095 76 ntBASIC1.44□□□□□ -2.18
NPAS1Q99742 MIR4524B-201ENST00000581569 115 ntBASIC1.44□□□□□ -2.18
NPAS1Q99742 MIR8065-201ENST00000620577 100 ntBASIC1.44□□□□□ -2.18
NPAS1Q99742 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
NPAS1Q99742 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
NPAS1Q99742 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.43□□□□□ -2.18
NPAS1Q99742 Y_RNA.37-201ENST00000362606 108 ntBASIC1.43□□□□□ -2.18
NPAS1Q99742 Y_RNA.66-201ENST00000362862 102 ntBASIC1.43□□□□□ -2.18
NPAS1Q99742 MIR518F-201ENST00000384973 87 ntBASIC1.43□□□□□ -2.18
NPAS1Q99742 AC087499.4-201ENST00000448505 178 ntBASIC1.43□□□□□ -2.18
NPAS1Q99742 AP003484.1-201ENST00000530974 250 ntBASIC1.43□□□□□ -2.18
NPAS1Q99742 AL645939.4-201ENST00000604495 135 ntBASIC1.43□□□□□ -2.18
NPAS1Q99742 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.43□□□□□ -2.18
NPAS1Q99742 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
NPAS1Q99742 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
NPAS1Q99742 SNORA25.7-201ENST00000364375 127 ntBASIC1.42□□□□□ -2.18
NPAS1Q99742 SNORD28B-201ENST00000390993 75 ntBASIC1.42□□□□□ -2.18
NPAS1Q99742 RNU7-67P-201ENST00000459003 62 ntBASIC1.42□□□□□ -2.18
NPAS1Q99742 SNORA18.4-201ENST00000516440 124 ntBASIC1.42□□□□□ -2.18
NPAS1Q99742 AC007751.1-201ENST00000529260 376 ntBASIC1.42□□□□□ -2.18
NPAS1Q99742 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.42□□□□□ -2.18
NPAS1Q99742 MIR342-201ENST00000362212 99 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 179 ms