Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MIR5688-201ENST00000580619 83 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 FAM106DP-201ENST00000586416 501 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 AL391903.3-201ENST00000612158 163 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.22□□□□□ -2.21
USP28Q96RU2 SNORD45.3-201ENST00000363836 72 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 RNU6-200P-201ENST00000364743 107 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 Y_RNA.412-201ENST00000384001 104 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 Y_RNA.515-201ENST00000384535 112 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 Y_RNA.571-201ENST00000384753 98 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 MIR618-201ENST00000385287 98 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.22□□□□□ -2.21
USP28Q96RU2 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.22□□□□□ -2.21
USP28Q96RU2 Y_RNA.714-201ENST00000517065 90 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 MIR3671-201ENST00000580455 88 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 MIR4769-201ENST00000584126 77 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 SNORD114-21-201ENST00000606412 72 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 AC108706.1-201ENST00000611053 297 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
USP28Q96RU2 AL442644.1-201ENST00000454390 3105 ntBASIC1.22□□□□□ -2.21
USP28Q96RU2 Y_RNA.7-201ENST00000362352 102 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 Y_RNA.182-201ENST00000363880 111 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 RNU6-1138P-201ENST00000365359 106 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 RNU6-442P-201ENST00000383968 104 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 RNU6-1219P-201ENST00000516143 112 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 RNU7-40P-201ENST00000516397 64 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 RNU7-25P-201ENST00000516544 62 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 AC007751.1-201ENST00000529260 376 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 AC087685.1-201ENST00000587507 141 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 U6.106-201ENST00000636360 105 ntBASIC1.21□□□□□ -2.22
USP28Q96RU2 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.21□□□□□ -2.22
USP28Q96RU2 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.22
USP28Q96RU2 Y_RNA.336-201ENST00000365307 109 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 MIR548A2-201ENST00000384956 97 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 MIR653-201ENST00000385279 96 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 MIR802-201ENST00000390235 94 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 RNU6-578P-201ENST00000390980 103 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.2□□□□□ -2.22
USP28Q96RU2 SNX2P2-201ENST00000424553 323 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 MTND5P15-201ENST00000434246 349 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 HMGN2P32-201ENST00000444648 269 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 RPS29P28-201ENST00000446439 141 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 AC023449.1-201ENST00000454464 154 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 Y_RNA.644-201ENST00000459006 113 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 Y_RNA.674-201ENST00000516362 113 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 AC109810.1-201ENST00000534066 224 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 MIR4744-201ENST00000581563 82 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 AC006441.5-201ENST00000612680 209 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 AC015726.2-201ENST00000620112 122 ntBASIC1.2□□□□□ -2.22
USP28Q96RU2 MIR378A-201ENST00000362177 66 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 Y_RNA.66-201ENST00000362862 102 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 RNU6-1020P-201ENST00000363684 107 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 RNU4-70P-201ENST00000384579 139 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 MIR452-201ENST00000385020 85 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 RNU6-482P-201ENST00000391068 107 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 MIR548O-201ENST00000408583 114 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 SNORA18.7-201ENST00000516910 131 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 RNU6-1270P-201ENST00000517128 108 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 RNU6-165P-201ENST00000517170 99 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 Z83818.1-201ENST00000603584 150 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.19□□□□□ -2.22
USP28Q96RU2 Y_RNA.23-201ENST00000362496 106 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 Y_RNA.634-201ENST00000364811 113 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 SNORA2.2-201ENST00000365473 135 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 SNORD61-201ENST00000384252 73 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 Y_RNA.547-201ENST00000384654 119 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 MIR518F-201ENST00000384973 87 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 MIR15B-201ENST00000385045 98 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 SNORD28B-201ENST00000390993 75 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 Y_RNA.797-201ENST00000515977 94 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 RNU6-237P-201ENST00000515985 71 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 RNU7-181P-201ENST00000517234 74 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 AC090049.2-201ENST00000550377 109 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 AP000942.3-201ENST00000603702 160 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 MIR8065-201ENST00000620577 100 ntBASIC1.18□□□□□ -2.22
USP28Q96RU2 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.17□□□□□ -2.22
USP28Q96RU2 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
USP28Q96RU2 RNA5SP432-201ENST00000362480 116 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 RNU6-103P-201ENST00000363686 107 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 Y_RNA.233-201ENST00000364407 101 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 Y_RNA.432-201ENST00000384087 111 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 RNY3P5-201ENST00000384127 102 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 Y_RNA.793-201ENST00000411222 111 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 AL121914.1-201ENST00000450188 156 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 snoU13.25-201ENST00000458945 104 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 AC074198.2-201ENST00000508153 258 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 RNU4-57P-201ENST00000515980 135 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 RNU6-1299P-201ENST00000516316 100 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 RNU6-861P-201ENST00000516745 106 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 AP002392.1-201ENST00000537692 208 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 AL512310.8-201ENST00000550183 120 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 CYP3A52P-201ENST00000563326 91 ntBASIC1.17□□□□□ -2.22
USP28Q96RU2 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.17□□□□□ -2.22
USP28Q96RU2 Y_RNA.121-201ENST00000363309 113 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 Y_RNA.140-201ENST00000363474 103 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 RNU6-682P-201ENST00000363843 106 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 RNU6-275P-201ENST00000364910 107 ntBASIC1.16□□□□□ -2.22
USP28Q96RU2 RNU6-53P-201ENST00000365367 106 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms