Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
CCDC140Q96MF4 MIR548A3-201ENST00000385297 97 ntBASIC2.11□□□□□ -2.07
CCDC140Q96MF4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC140Q96MF4 MIR4298-201ENST00000584380 73 ntBASIC2.11□□□□□ -2.07
CCDC140Q96MF4 MIR6129-201ENST00000616087 109 ntBASIC2.11□□□□□ -2.07
CCDC140Q96MF4 AC243994.1-201ENST00000618627 109 ntBASIC2.11□□□□□ -2.07
CCDC140Q96MF4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC140Q96MF4 RNU1-112P-201ENST00000364401 164 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 Y_RNA.346-201ENST00000365385 112 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 RNU6-476P-201ENST00000384726 107 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 MIR17-201ENST00000385012 84 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 RNA5SP21-201ENST00000410917 96 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.1□□□□□ -2.07
CCDC140Q96MF4 SNORA31.15-201ENST00000516771 132 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 SNORA74.3-201ENST00000517108 154 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC140Q96MF4 MIR4713-201ENST00000582691 75 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.1□□□□□ -2.07
CCDC140Q96MF4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC140Q96MF4 RNU6-1144P-201ENST00000384247 104 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 RNU6-429P-201ENST00000384582 108 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 RNU6-1067P-201ENST00000384752 107 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 MIR548A1-201ENST00000385041 97 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 RPS29P29-201ENST00000456396 171 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 RNU7-164P-201ENST00000459221 62 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 RNU6-322P-201ENST00000516010 103 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 AL670379.3-201ENST00000605040 251 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 AL033523.1-201ENST00000605153 153 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 MIR4791-201ENST00000607666 84 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 MIR6895-201ENST00000613497 78 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 MIR8074-201ENST00000615081 81 ntBASIC2.09□□□□□ -2.07
CCDC140Q96MF4 ZNF658B-202ENST00000615961 3375 ntBASIC2.09□□□□□ -2.08
CCDC140Q96MF4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC140Q96MF4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC140Q96MF4 RNU6-661P-201ENST00000362409 107 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 SNORA70.7-201ENST00000384159 133 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 MIR520C-201ENST00000385005 87 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 AL161935.2-201ENST00000414627 60 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 Y_RNA.649-201ENST00000459077 103 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 SNORA31.4-201ENST00000516049 129 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 AC022254.1-201ENST00000567857 235 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 MIR4635-201ENST00000583759 79 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 ELOCP29-201ENST00000588193 334 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 MIR203B-201ENST00000636080 86 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 FO624990.1-201ENST00000636373 85 ntBASIC2.08□□□□□ -2.08
CCDC140Q96MF4 RNU6-834P-201ENST00000362367 110 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 RNU6-215P-201ENST00000365169 102 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 MIR9-1-201ENST00000385198 89 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 RN7SKP132-201ENST00000516001 208 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 GTF3AP2-201ENST00000557014 266 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 SNORA77B-201ENST00000578179 125 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 MIR4305-201ENST00000583252 102 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 MIR8063-201ENST00000621930 81 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 AC005336.3-201ENST00000623833 2679 ntBASIC2.07□□□□□ -2.08
CCDC140Q96MF4 AL596028.1-201ENST00000326971 197 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 SNORA51.10-201ENST00000384418 136 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 MIRLET7F2-201ENST00000385277 83 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 AL451046.2-201ENST00000403074 277 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 RNU2-52P-201ENST00000410680 190 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 RNA5SP136-201ENST00000410906 107 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 RNU2-13P-201ENST00000515909 113 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 RNY4P20-201ENST00000516678 93 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 RNU7-53P-201ENST00000516705 60 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 RNU6-919P-201ENST00000516731 104 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 RNU6-922P-201ENST00000516753 99 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC140Q96MF4 MIR4764-201ENST00000580680 88 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 AL049779.4-201ENST00000604500 156 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 AC103810.6-201ENST00000606708 136 ntBASIC2.06□□□□□ -2.08
CCDC140Q96MF4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC140Q96MF4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC140Q96MF4 AC092881.1-201ENST00000638218 2733 ntBASIC2.05□□□□□ -2.08
CCDC140Q96MF4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
CCDC140Q96MF4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC140Q96MF4 RNU6-44P-201ENST00000384045 107 ntBASIC2.05□□□□□ -2.08
CCDC140Q96MF4 AL035461.1-201ENST00000421490 332 ntBASIC2.05□□□□□ -2.08
CCDC140Q96MF4 RPL23AP42-201ENST00000471152 471 ntBASIC2.05□□□□□ -2.08
CCDC140Q96MF4 MIR5694-201ENST00000581190 76 ntBASIC2.05□□□□□ -2.08
CCDC140Q96MF4 AC021613.1-201ENST00000623880 111 ntBASIC2.05□□□□□ -2.08
CCDC140Q96MF4 MIR6733-201ENST00000635723 61 ntBASIC2.05□□□□□ -2.08
CCDC140Q96MF4 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC140Q96MF4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
CCDC140Q96MF4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC140Q96MF4 RNU6-859P-201ENST00000362728 107 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 Y_RNA.298-201ENST00000364960 107 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 SNORD116-21-201ENST00000384507 92 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 Y_RNA.537-201ENST00000384626 109 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 MIR653-201ENST00000385279 96 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 AL023284.1-201ENST00000403956 276 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 RNU6-1190P-201ENST00000410811 104 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 RNA5SP356-201ENST00000515972 94 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 RNU2-35P-201ENST00000516446 142 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 RNU7-43P-201ENST00000516554 64 ntBASIC2.04□□□□□ -2.08
CCDC140Q96MF4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC140Q96MF4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC140Q96MF4 Y_RNA.81-201ENST00000362997 102 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CCDC140Q96MF4 RNU6-913P-201ENST00000390913 95 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 RNA5SP210-201ENST00000391034 120 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 HMGN2P19-201ENST00000425149 265 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms