Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 MIR342-201ENST00000362212 99 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 RNU4-16P-201ENST00000364737 141 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 RNU1-109P-201ENST00000383960 147 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 Y_RNA.558-201ENST00000384685 113 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 HMGN2P39-201ENST00000398005 273 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 RPL39P25-201ENST00000449384 154 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 AC108938.1-201ENST00000451204 136 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 SNORD109B-201ENST00000458961 67 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 SNORD109A-201ENST00000459128 67 ntBASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
UBE3DQ7Z6J8 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 Y_RNA.93-201ENST00000363066 109 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 RNU4-36P-201ENST00000364294 144 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 SNORA24-201ENST00000384096 131 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 Y_RNA.507-201ENST00000384500 99 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 Y_RNA.531-201ENST00000384589 121 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 MIR590-201ENST00000385008 97 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-1319P-201ENST00000390855 104 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-747P-201ENST00000390928 104 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-241P-201ENST00000391148 104 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-177P-201ENST00000411257 104 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 RNU2-11P-201ENST00000459191 187 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 RNA5SP282-201ENST00000516355 108 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 RNU7-6P-201ENST00000516845 62 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 AC004812.1-201ENST00000540773 146 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 MIR7106-201ENST00000612419 65 ntBASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
UBE3DQ7Z6J8 Y_RNA.10-201ENST00000362371 110 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-294P-201ENST00000364999 102 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNU1-51P-201ENST00000365345 176 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 Y_RNA.370-201ENST00000365589 108 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 SNORA51.10-201ENST00000384418 136 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-816P-201ENST00000390914 107 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNA5SP210-201ENST00000391034 120 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-1268P-201ENST00000391214 107 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-1239P-201ENST00000391310 107 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNU2-7P-201ENST00000410794 178 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 HMGN2P3-201ENST00000433603 273 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 HMGN2P5-201ENST00000436882 273 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNA5SP356-201ENST00000515972 94 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 SCARNA16.3-201ENST00000516595 184 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 RNU7-181P-201ENST00000517234 74 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 FAM71BP1-201ENST00000604431 523 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 U1.36-201ENST00000620684 176 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 AC092881.1-201ENST00000638218 2733 ntBASIC2.48□□□□□ -2.01
UBE3DQ7Z6J8 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 SNORD115-2-201ENST00000362842 82 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 SNORD115-20-201ENST00000365099 82 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 RNA5SP492-201ENST00000411330 114 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 HMGN2P35-201ENST00000412164 270 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 POLR2J4-204ENST00000418424 324 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 AC141557.1-201ENST00000540982 400 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 DNAJC19P9-201ENST00000555084 351 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 MIR4709-201ENST00000577272 72 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 MIR4319-201ENST00000577285 85 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 MIR3670-2-201ENST00000582974 65 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 MIR3670-1-201ENST00000584160 65 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 MIR3670-3-201ENST00000584855 65 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 HSPE1P19-201ENST00000603327 295 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 MIR3670-4-201ENST00000612260 65 ntBASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
UBE3DQ7Z6J8 AC062016.1-201ENST00000355719 319 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 Y_RNA.220-201ENST00000364244 109 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 SNORA4.2-201ENST00000365313 147 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 Y_RNA.430-201ENST00000384081 110 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 MIR660-201ENST00000385235 97 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 NDUFB4P4-201ENST00000404822 243 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 MTATP8P2-201ENST00000435212 202 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 RPS29P29-201ENST00000456396 171 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 RNU7-73P-201ENST00000458743 63 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 snoU13.27-201ENST00000459278 104 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 RPL23AP63-201ENST00000498752 471 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 RNU2-13P-201ENST00000515909 113 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 RNVU1-2-201ENST00000516326 135 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 AC087741.2-201ENST00000619415 172 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 ICE2P2-201ENST00000483823 2787 ntBASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
UBE3DQ7Z6J8 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 RNU6-859P-201ENST00000362728 107 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 RNU6-112P-201ENST00000363599 104 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 Y_RNA.494-201ENST00000384432 111 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 RNU6-1067P-201ENST00000384752 107 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 RNU4-69P-201ENST00000410677 143 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 RPS3AP1-201ENST00000413190 320 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 PGBD4P5-201ENST00000445958 426 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 RNU7-34P-201ENST00000459394 64 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 SNORA31.4-201ENST00000516049 129 ntBASIC2.45□□□□□ -2.02
UBE3DQ7Z6J8 DEFB131E-201ENST00000532329 154 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 203.4 ms