| ATG9A | Q7Z3C6 | RNU6-1271P-201 | ENST00000517049 | 105 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | RNU6-1116P-201 | ENST00000517269 | 99 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | AL365434.2-201 | ENST00000607979 | 234 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | AC106754.2-201 | ENST00000623006 | 233 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | Y_RNA.60-201 | ENST00000362831 | 98 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | RNY1-201 | ENST00000364228 | 113 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | Y_RNA.229-201 | ENST00000364347 | 113 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | RNU6-1228P-201 | ENST00000391014 | 107 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | RNU6-651P-201 | ENST00000411040 | 105 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | AC092991.1-201 | ENST00000477176 | 376 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | RNU7-149P-201 | ENST00000516739 | 59 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | AC019176.1-201 | ENST00000518519 | 225 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | MIR4643-201 | ENST00000577473 | 78 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | AL049861.1-201 | ENST00000603130 | 150 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | GHRLOS.1-201 | ENST00000610995 | 70 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | Y_RNA.76-201 | ENST00000362931 | 109 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | RNU6-653P-201 | ENST00000363074 | 106 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | SNORA25.8-201 | ENST00000364831 | 128 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | RNY4P28-201 | ENST00000365281 | 93 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | Y_RNA.539-201 | ENST00000384635 | 107 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | Y_RNA.552-201 | ENST00000384665 | 112 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | Y_RNA.587-201 | ENST00000391210 | 103 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | AL353747.2-201 | ENST00000439207 | 205 nt | TSL 3 BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | RPL39P39-201 | ENST00000455840 | 151 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | SNORD116-28-201 | ENST00000516123 | 91 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | FAM106DP-201 | ENST00000586416 | 501 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | TRAJ36-201 | ENST00000614481 | 58 nt | APPRIS P1 BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | Pinc.1-201 | ENST00000616452 | 154 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | SPTSSB-205 | ENST00000620149 | 231 nt | APPRIS P1 BASIC | 1.34 | □□□□□ -2.19 | | |
| ATG9A | Q7Z3C6 | DEFB131A-201 | ENST00000334879 | 213 nt | APPRIS P1 TSL 1 (best) BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU4-10P-201 | ENST00000364383 | 140 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | MIR618-201 | ENST00000385287 | 98 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | SNORA79-201 | ENST00000408376 | 140 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC111194.2-201 | ENST00000511222 | 455 nt | TSL 5 BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-1299P-201 | ENST00000516316 | 100 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-830P-201 | ENST00000516353 | 107 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-111P-201 | ENST00000517179 | 105 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | MIR4295-201 | ENST00000585286 | 85 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | TTC28-AS1_2.1-201 | ENST00000611117 | 157 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC006441.5-201 | ENST00000612680 | 209 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | UGP2-230 | ENST00000626380 | 276 nt | TSL 5 BASIC | 1.33 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | MT-ATP8-201 | ENST00000361851 | 207 nt | APPRIS P1 BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.121-201 | ENST00000363309 | 113 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.199-201 | ENST00000364014 | 102 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.200-201 | ENST00000364018 | 102 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-1067P-201 | ENST00000384752 | 107 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | MIR520E-201 | ENST00000384867 | 87 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.626-201 | ENST00000411288 | 95 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AL353742.1-201 | ENST00000453455 | 224 nt | TSL 3 BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | snoU13.18-201 | ENST00000459483 | 104 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-917P-201 | ENST00000516294 | 104 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC087362.2-201 | ENST00000529325 | 256 nt | TSL 3 BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Z83818.1-201 | ENST00000603584 | 150 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | SNORD114-21-201 | ENST00000606412 | 72 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RMST_2.1-201 | ENST00000617263 | 136 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC141273.2-201 | ENST00000618989 | 130 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-728P-201 | ENST00000365375 | 104 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-381P-201 | ENST00000391259 | 108 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-847P-201 | ENST00000411115 | 108 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AL135923.1-201 | ENST00000413066 | 196 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNA5SP153-201 | ENST00000516498 | 76 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-922P-201 | ENST00000516753 | 99 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC090142.3-201 | ENST00000519012 | 385 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AL512310.8-201 | ENST00000550183 | 120 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | MIR3664-201 | ENST00000579074 | 99 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC011921.3-201 | ENST00000605540 | 361 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AL442644.1-201 | ENST00000454390 | 3105 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC068700.1-201 | ENST00000565862 | 3754 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.7-201 | ENST00000362352 | 102 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.83-201 | ENST00000363005 | 113 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-268P-201 | ENST00000364174 | 107 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | SNORA1.2-201 | ENST00000365189 | 134 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.432-201 | ENST00000384087 | 111 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | MIR526A1-201 | ENST00000384897 | 85 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | TRAJ47-201 | ENST00000390490 | 57 nt | APPRIS P1 BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | SNORD72-201 | ENST00000390994 | 80 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AL606845.1-201 | ENST00000404881 | 255 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RPS27P16-201 | ENST00000425758 | 201 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC245047.8-201 | ENST00000456455 | 284 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC087343.1-201 | ENST00000477341 | 475 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.680-201 | ENST00000516441 | 93 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU7-43P-201 | ENST00000516554 | 64 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-365P-201 | ENST00000517113 | 106 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | CEP290-201 | ENST00000309041 | 7616 nt | APPRIS ALT1 TSL 5 BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.308-201 | ENST00000365043 | 101 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | MIR516B2-201 | ENST00000385190 | 85 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU2-70P-201 | ENST00000410718 | 179 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | SNRPGP14-201 | ENST00000435400 | 219 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU6-504P-201 | ENST00000516568 | 104 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RN7SKP88-201 | ENST00000516847 | 250 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | SNORA74.3-201 | ENST00000517108 | 154 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC019288.1-201 | ENST00000557918 | 224 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | MIR4744-201 | ENST00000581563 | 82 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | AC009779.6-201 | ENST00000603972 | 165 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | 7SK.8-201 | ENST00000612110 | 250 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | 7SK.11-201 | ENST00000615477 | 250 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | 7SK.13-201 | ENST00000622040 | 250 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | C9orf84-201 | ENST00000318737 | 4661 nt | APPRIS P3 TSL 1 (best) BASIC | 1.29 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | SNORD24-201 | ENST00000383884 | 75 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| ATG9A | Q7Z3C6 | RNU4-70P-201 | ENST00000384579 | 139 nt | BASIC | 1.28 | □□□□□ -2.2 | | |